Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 5
- vacuole 6
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71170 | Canola | cytosol, plastid, vacuole | 64.39 | 80.84 |
| CDY49598 | Canola | cytosol | 26.32 | 79.37 |
| Bra036392.1-P | Field mustard | cytosol | 70.35 | 76.53 |
| CDY49599 | Canola | extracellular, vacuole | 44.56 | 71.75 |
| AT4G33810.3 | Thale cress | extracellular, vacuole | 61.05 | 61.16 |
| AT4G33820.1 | Thale cress | extracellular, vacuole | 59.3 | 59.3 |
| KRG91114 | Soybean | nucleus | 8.42 | 57.14 |
| KRH35663 | Soybean | plasma membrane, vacuole | 45.96 | 45.09 |
| KRG91113 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 45.61 | 44.83 |
| KRG91115 | Soybean | cytoskeleton, cytosol, plastid | 13.86 | 44.13 |
| KRH35662 | Soybean | cytosol, nucleus, vacuole | 28.77 | 39.61 |
| AT4G38300.1 | Thale cress | mitochondrion | 18.25 | 37.55 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 35.79 | 35.42 |
| AT4G33840.1 | Thale cress | vacuole | 35.09 | 34.72 |
| AT4G33830.1 | Thale cress | vacuole | 34.74 | 34.38 |
| AT4G38650.1 | Thale cress | vacuole | 32.28 | 32.74 |
| AT4G08160.1 | Thale cress | cytosol | 23.16 | 17.55 |
| AT1G58370.2 | Thale cress | cytosol | 22.11 | 13.33 |
| AT1G10050.3 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.68 | 12.33 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | EntrezGene:815957 | UniProt:A0A178VRY1 | ProteinID:AEC06322.1 |
| EMBL:AK175950 | ArrayExpress:AT2G14690 | EnsemblPlantsGene:AT2G14690 | RefSeq:AT2G14690 | TAIR:AT2G14690 | RefSeq:AT2G14690-TAIR-G |
| EnsemblPlants:AT2G14690.1 | TAIR:AT2G14690.1 | Unigene:At.71261 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0031176 |
| InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | RefSeq:NP_179076.3 | ProteinID:OAP09197.1 |
| PFAM:PF00331 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF18 | UniProt:Q680B7 | SMART:SM00633 |
| SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000042BB82 | SEG:seg | : |
Description
1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
Coordinates
chr2:-:6283801..6286055
Molecular Weight (calculated)
64948.0 Da
IEP (calculated)
6.523
GRAVY (calculated)
-0.329
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.