CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, vacuole
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49598	Canola	cytosol	40.97	98.41
CDX72432	Canola	cytosol	22.03	64.52
AT2G14690.1	Thale cress	vacuole	80.84	64.39
CDY49599	Canola	extracellular, vacuole	48.02	61.58
KRG91114	Soybean	nucleus	10.13	54.76
CDX72430	Canola	extracellular, vacuole	64.32	51.5
CDY49377	Canola	extracellular, vacuole	63.88	50.88
KRG91115	Soybean	cytoskeleton, cytosol, plastid	16.52	41.9
KRH35663	Soybean	plasma membrane, vacuole	48.02	37.52
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.58	37.24
KRH35662	Soybean	cytosol, nucleus, vacuole	31.28	34.3
CDY28323	Canola	vacuole	39.43	32.14
CDY69164	Canola	vacuole	40.09	31.76
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	39.87	31.59
CDY48434	Canola	vacuole	39.43	31.24
CDY49378	Canola	plasma membrane, vacuole	39.21	31.12
CDY28325	Canola	vacuole	39.43	30.92
CDY48433	Canola	vacuole	39.43	30.92
CDX90288	Canola	endoplasmic reticulum, extracellular	35.24	28.37
CDY12095	Canola	vacuole	27.53	25.67
CDX72434	Canola	cytosol, vacuole	40.75	21.09
CDY29140	Canola	cytosol	25.55	13.6
CDY53797	Canola	cytosol	26.21	12.92
CDY48844	Canola	cytosol	25.77	12.7
CDX75175	Canola	cytosol	25.99	12.37
CDY53833	Canola	endoplasmic reticulum, extracellular	24.67	7.7
CDY22606	Canola	endoplasmic reticulum, vacuole	24.67	7.69

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	GO:A0A078C2T5	EnsemblPlants:CDX71170	ProteinID:CDX71170	ProteinID:CDX71170.1
InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00144686001	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	PFAM:PF00331
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF18	MetaCyc:PWY-6784	SMART:SM00633	SUPFAM:SSF51445
UniPathway:UPA00114	UniParc:UPI0004EEFC2B	:	:	:	:

Description

BnaC07g04490D

Coordinates

chrLK031792:-:437626..439265

Molecular Weight (calculated)

51865.9 Da

IEP (calculated)

5.710

GRAVY (calculated)

-0.374

Length

454 amino acids

Sequence
(BLAST)

001: MAKNGCWSLL KGGFIVNVSA PVDIFFKSDG SAAAEISVQN VRLQRFNKTQ WRLQQDQVIE KIRKSKVRFQ LSFQNKSPVE GSFISIKQIR PSFLLGCAMN
101: YRILESDSYR EWFVSRFRLT SFTNEMKWYT TEEVRGQENY TLADAMMQLA EENKILVKGH TVLWDDKKWQ PIWVKSITDP DDLKNVTLNR MNSVMKRYKG
201: RLIGWDVINE NLHYSYYEDM LGKNASAMIY SLASKIDPDI PLFINEYNTV EYAKGVGSPI NVKNKMQEIV SYPGNMNIKG GIGAQAHFVP AQPNLPYMRS
301: ALDTLGSLGF PVWLTEVDMP KCPDQVKYME EVLREAYSHP AVQGIILYAG PEMSGFNKLT LADNDFNNTK AGDLIDKLLQ EWQQEPAEIP VEYHEHNDEE
401: QSRIIGFSPE VSLLHGHYTV TVTNPSMKNF STTFSLEVTT ESGQLQVVQL ELDV

Best Arabidopsis Sequence Match ( AT2G14690.1 )
(BLAST)

001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA

Arabidopsis Description

1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.