Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69164 | Canola | vacuole | 96.16 | 96.16 |
| CDY28323 | Canola | vacuole | 84.29 | 86.71 |
| CDY48434 | Canola | vacuole | 86.39 | 86.39 |
| AT4G33840.1 | Thale cress | vacuole | 79.41 | 78.99 |
| AT4G33830.1 | Thale cress | vacuole | 77.31 | 76.91 |
| CDY49378 | Canola | plasma membrane, vacuole | 73.82 | 73.95 |
| CDY48433 | Canola | vacuole | 71.9 | 71.16 |
| CDY28325 | Canola | vacuole | 71.55 | 70.81 |
| KRH29254 | Soybean | cytosol | 55.67 | 56.36 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 53.58 | 55.72 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 57.24 | 55.13 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 53.23 | 54.76 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 50.79 | 52.72 |
| Zm00001d028103_P001 | Maize | extracellular, vacuole | 52.01 | 51.38 |
| KRH29253 | Soybean | extracellular, vacuole | 50.44 | 51.06 |
| CDX72434 | Canola | cytosol, vacuole | 78.01 | 50.97 |
| EER92683 | Sorghum | vacuole | 51.66 | 50.68 |
| Os03t0201500-01 | Rice | vacuole | 50.26 | 50.17 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 49.74 | 50.09 |
| KXG39936 | Sorghum | extracellular, vacuole | 50.09 | 49.74 |
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.39 | 49.65 |
| Zm00001d048151_P001 | Maize | vacuole | 50.26 | 49.57 |
| TraesCS4B01G259100.1 | Wheat | vacuole | 49.04 | 49.3 |
| Os03t0201901-00 | Rice | cytosol | 49.04 | 49.3 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.21 | 49.13 |
| TraesCS4D01G259100.1 | Wheat | vacuole | 49.39 | 48.54 |
| TraesCS4B01G259400.1 | Wheat | vacuole | 49.04 | 48.2 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 48.87 | 48.03 |
| Os10t0351700-01 | Rice | plasma membrane | 47.99 | 47.33 |
| Solyc01g106990.1.1 | Tomato | vacuole | 47.29 | 46.97 |
| HORVU4Hr1G070260.12 | Barley | vacuole | 49.39 | 46.32 |
| HORVU2Hr1G113150.1 | Barley | cytosol | 43.28 | 46.27 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 46.95 | 45.83 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 47.99 | 45.68 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 46.77 | 45.66 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 46.77 | 45.66 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 47.12 | 45.61 |
| HORVU1Hr1G023120.1 | Barley | extracellular | 45.72 | 45.57 |
| TraesCS1B01G124500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 45.55 | 45.47 |
| Zm00001d030468_P001 | Maize | cytosol | 46.6 | 45.33 |
| TraesCS1D01G107700.1 | Wheat | extracellular, vacuole | 45.2 | 45.12 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 45.72 | 44.79 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 44.85 | 44.77 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 45.38 | 44.52 |
| PGSC0003DMT400037865 | Potato | cytosol | 43.8 | 44.19 |
| TraesCS2B01G537100.1 | Wheat | vacuole | 44.15 | 44.08 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 44.85 | 43.93 |
| TraesCS2D01G510500.1 | Wheat | vacuole | 43.63 | 43.55 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 43.8 | 43.5 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 49.74 | 43.31 |
| CDX72432 | Canola | cytosol | 11.69 | 43.23 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 45.55 | 42.86 |
| EER92684 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 41.71 | 41.78 |
| CDX71170 | Canola | cytosol, plastid, vacuole | 31.59 | 39.87 |
| Os10t0351600-00 | Rice | cytosol | 39.44 | 38.5 |
| Os03t0201800-01 | Rice | extracellular | 39.09 | 38.49 |
| CDX90288 | Canola | endoplasmic reticulum, extracellular | 37.17 | 37.77 |
| CDX72430 | Canola | extracellular, vacuole | 36.82 | 37.21 |
| CDY49377 | Canola | extracellular, vacuole | 36.82 | 37.02 |
| CDY12095 | Canola | vacuole | 30.89 | 36.34 |
| CDY49599 | Canola | extracellular, vacuole | 21.99 | 35.59 |
| CDY49598 | Canola | cytosol | 11.69 | 35.45 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 46.6 | 29.15 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 43.98 | 26.3 |
| Solyc01g106980.1.1 | Tomato | cytosol | 45.72 | 23.73 |
| CDY48844 | Canola | cytosol | 27.92 | 17.37 |
| CDY29140 | Canola | cytosol | 25.65 | 17.23 |
| CDY53797 | Canola | cytosol | 27.4 | 17.05 |
| CDX75175 | Canola | cytosol | 25.83 | 15.51 |
| CDY53833 | Canola | endoplasmic reticulum, extracellular | 27.23 | 10.73 |
| CDY22606 | Canola | endoplasmic reticulum, vacuole | 27.23 | 10.71 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | GO:A0A078GSZ3 | UniProt:A0A078GSZ3 | EnsemblPlants:CDY28324 |
| ProteinID:CDY28324 | ProteinID:CDY28324.1 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 |
| EnsemblPlantsGene:GSBRNA2T00040086001 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 |
| PFAM:PF02018 | PFscan:PS51257 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | MetaCyc:PWY-6784 |
| SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | UniPathway:UPA00114 | UniParc:UPI0004EDEB25 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g66350DBnaC03g66350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSZ3]
Coordinates
chrLK032217:-:394094..398743
Molecular Weight (calculated)
63744.4 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.272
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLLLLLAF CCLSLSSCEE KYVPYDYSAT IECLGNPNKP QYNGGIIVNP ELQNGSQGWS QLGNVKVDFT ESGGNKFVIA RGRNQSYDSV SQMVYLEKGL
101: LYTFSAWLQV SQGNAPVRAV FKKNGEYKHA GSVIAESKCW SMLKGGLTVD ESGPADLLFE SEDISAEIWV DSVSLQPFTQ EEWNSHHEQS INMKRKGAVR
201: IRAVNSAGEP VPNATISILQ NRLGFPFGCA VENNILGNQA YQDWFTKRFT VTTFGNEMKW YSTEVVRGKE DYSTADAMVK LFQQHGIAIR GHNIIWDNPI
301: YQPSWVNALS VSDLYNAVKR RVFSVVTRYK GQLAGWDVVN ENLHFSFLES KFGPKASYNV FAQAHALDPK TTMFMNEYNT LEQPGDPVAT PARYLQKLRE
401: LQSIHMAGNI PLGIGLQCHF STPNIPYMRS AIDTLAATGL PIWLTEVDVA APPNVQANYF EQILREGHAH PQVKGMVTWA GYNPKGCYRM CLTDGNFRNL
501: PTGDVVDKLL REWGGLSGQT TGLTDADGFF EASLFHGDYN LDISHPLTNS TASHSFQLAS EDSNPSPSIV FRV
101: LYTFSAWLQV SQGNAPVRAV FKKNGEYKHA GSVIAESKCW SMLKGGLTVD ESGPADLLFE SEDISAEIWV DSVSLQPFTQ EEWNSHHEQS INMKRKGAVR
201: IRAVNSAGEP VPNATISILQ NRLGFPFGCA VENNILGNQA YQDWFTKRFT VTTFGNEMKW YSTEVVRGKE DYSTADAMVK LFQQHGIAIR GHNIIWDNPI
301: YQPSWVNALS VSDLYNAVKR RVFSVVTRYK GQLAGWDVVN ENLHFSFLES KFGPKASYNV FAQAHALDPK TTMFMNEYNT LEQPGDPVAT PARYLQKLRE
401: LQSIHMAGNI PLGIGLQCHF STPNIPYMRS AIDTLAATGL PIWLTEVDVA APPNVQANYF EQILREGHAH PQVKGMVTWA GYNPKGCYRM CLTDGNFRNL
501: PTGDVVDKLL REWGGLSGQT TGLTDADGFF EASLFHGDYN LDISHPLTNS TASHSFQLAS EDSNPSPSIV FRV
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.