Factsheet for Zm00001d028103_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92683	Sorghum	vacuole	93.79	93.15
Zm00001d048151_P001	Maize	vacuole	86.72	86.57
Os03t0201901-00	Rice	cytosol	76.03	77.37
TraesCS4D01G259100.1	Wheat	vacuole	74.66	74.27
TraesCS4B01G259400.1	Wheat	vacuole	74.48	74.1
TraesCS4A01G045800.1	Wheat	vacuole	73.45	73.07
HORVU4Hr1G070260.12	Barley	vacuole	73.97	70.21
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	65.52	57.75
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	53.62	54.66
KRH29254	Soybean	cytosol	52.07	53.36
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	51.38	52.01
CDY69164	Canola	vacuole	51.38	52.01
AT4G33840.1	Thale cress	vacuole	51.55	51.91
VIT_03s0091g00900.t01	Wine grape	cytosol	49.66	51.71
AT4G33830.1	Thale cress	vacuole	51.03	51.39
CDY28323	Canola	vacuole	49.31	51.35
Bra034585.1-P	Field mustard	vacuole	50.69	51.31
CDY48434	Canola	vacuole	50.52	51.13
AT4G33860.1	Thale cress	plasma membrane, vacuole	50.52	50.87
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	48.28	50.82
Bra034584.1-P	Field mustard	vacuole	50.0	50.61
VIT_03s0091g00950.t01	Wine grape	cytosol	47.93	50.36
Zm00001d030468_P001	Maize	cytosol	50.86	50.08
VIT_03s0091g00880.t01	Wine grape	vacuole	51.03	49.75
CDY49378	Canola	plasma membrane, vacuole	48.62	49.3
KRH29253	Soybean	extracellular, vacuole	48.1	49.29
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	48.62	49.13
CDY48433	Canola	vacuole	48.79	48.88
CDY28325	Canola	vacuole	48.62	48.7
Solyc01g106990.1.1	Tomato	vacuole	44.48	44.71
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	44.14	43.76
Bra017609.1-P	Field mustard	nucleus	49.48	43.03
PGSC0003DMT400037865	Potato	cytosol	41.55	42.43
Solyc05g051260.2.1	Tomato	golgi, vacuole	41.03	41.25
Zm00001d028398_P003	Maize	golgi, vacuole	37.07	37.92
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	36.55	36.87
CDX72434	Canola	cytosol, vacuole	51.03	33.75
Zm00001d039946_P001	Maize	cytosol	23.28	32.37
GSMUA_Achr1P12520_001	Banana	mitochondrion	48.79	30.9
Zm00001d039958_P001	Maize	cytosol	14.14	30.71
GSMUA_Achr1P12510_001	Banana	cytosol	47.93	29.02
Zm00001d016558_P001	Maize	plastid	21.21	28.47
Solyc01g106980.1.1	Tomato	cytosol	44.14	23.19
Zm00001d013561_P001	Maize	extracellular	29.48	22.86
Zm00001d019586_P008	Maize	mitochondrion	29.83	15.74

Protein Annotations

EntrezGene:103632224	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	UniProt:A0A1D6JS31	InterPro:CenC_carb-bd
InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000
InterPro:IPR008979	ProteinID:ONL94723.1	PFAM:PF00331	PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490
PANTHER:PTHR31490:SF13	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0002214246
EnsemblPlantsGene:Zm00001d028103	EnsemblPlants:Zm00001d028103_P001	EnsemblPlants:Zm00001d028103_T001	SEG:seg	:	:

Description

Glycosyl hydrolase family 10 protein

Coordinates

chr1:+:23014401..23018862

Molecular Weight (calculated)

64543.9 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.318

Length

580 amino acids

Sequence
(BLAST)

001: MEERGVPAMG RTLFLPLLWI AMLTSAARVV QCLPYDYSSS SECLPEPLEP QYGGGILRNA NFSAGLQGWS AFGYGAVEEG LSATGNGYGV ARNRTRPYQS
101: VSQKVYLQND THYTLSAWLQ VSNGSADVRA VVKTDGEFIH AGAVEARSGC WSILKGGLTA PASGAAELYF ESNATVDIWV DSVSLQPFSR EEWAAHHHAA
201: IKSARKKTVR LRARDSAGKP VPGAQVRVEH VRSGFPLGSA MSAEILQSPA YQRWFTSRFT VTTFENEMKW YSTERVQGRE DYSVPDAMLR FAKSHGIAVR
301: GHNVFWDQPS QQPAWVRSLS QRQLQQATAR RIRSVMSRYA GQVIAWDVVN ENLHFQFFED KFGWDASAEF YRRAHQMDGQ ALMSMNEYNT LEWPGDTLAG
401: PSKYLGKLFQ IKKFPGNAND ARMAIGLEGH FSVPSIPYIR AALDTMSKAN APIWLTEIDV APGPNQAHYL EQILREVYAH PAVHGIILWT ARHPQGCYVM
501: CLTDDNFRNL PTGDVVDKLI AEWKTHSLAG VADADGYYEA ELFHGDYKVT VSHPVANSTV VQSLSIDRET DTDSEYTIHV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.