Factsheet for Zm00001d013561_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, vacuole
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 16602704
extracellular: 22501030
plastid: 23198870

msms PMID: 22501030 doi

C Liao, R Liu, F Zhang, C Li, X Li

Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93683	Sorghum	cytosol	94.12	94.12
TraesCS4D01G019500.1	Wheat	cytosol	82.62	85.01
TraesCS4B01G021800.1	Wheat	cytosol	82.35	84.73
TraesCS4A01G292300.1	Wheat	cytosol	83.29	84.53
HORVU4Hr1G003220.3	Barley	cytosol	82.62	83.74
Os03t0672900-00	Rice	extracellular	81.42	80.56
Zm00001d039958_P001	Maize	cytosol	20.19	56.55
Zm00001d039946_P001	Maize	cytosol	31.42	56.35
Zm00001d016558_P001	Maize	plastid	28.74	49.77
Zm00001d019586_P008	Maize	mitochondrion	53.34	36.31
Zm00001d028398_P003	Maize	golgi, vacuole	25.0	32.98
Zm00001d028103_P001	Maize	extracellular, vacuole	22.86	29.48
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	22.46	29.22
Zm00001d048151_P001	Maize	vacuole	21.93	28.23
Zm00001d030468_P001	Maize	cytosol	21.39	27.16
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	22.19	25.23

Protein Annotations

EntrezGene:103625996	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	UniProt:A0A1D6GKL1	ProteinID:AQK63870.1
InterPro:CenC_carb-bd	ncoils:Coil	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000221C006	EnsemblPlantsGene:Zm00001d013561	EnsemblPlants:Zm00001d013561_P001	EnsemblPlants:Zm00001d013561_T001	SEG:seg	:

Description

glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein

Coordinates

chr5:-:14348002..14350848

Molecular Weight (calculated)

82013.0 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.268

Length

748 amino acids

Sequence
(BLAST)

001: MAIGGDAGLL VGDGAGDDNI ILNPEFDDGL DSWAGSGCKI ELHDSLDDGK VLPANGKYFV AATGRTDTWN GVQQDVTARM QRKLLYEATA TVRLHSAAGG
101: GGGAVAPCEV RATLGVQTAD GRQQYLSVGK SQVSDKEWVQ LQGKILLNST VAKASIYIEG PPAGVDVLLD SLVVKHAQKA PPAPAPDFEN LEYGANIMQN
201: SNLDDGLNGW FPLGPCTLSV HDGGPRVLPP MAQESLELDD EPLNGKHIHV TNRSQTWMGP AQIITDKLTL YATYQVSAWV RVGAHASGAP QTINVAFAVD
301: SQWINGGQVL ARDERWYEVG GALRVEAKPA TRVMVYVQGP DAGVDLMVAG LQVFPVDRKA RVKHLKRLTD KVRKRDVVLK VTGADGAAAG AVKEADGVEV
401: RVRQVSNSFP LGACIMRTNM DNEDFVDFFT KNFNWAVFGN ELKWYWTEPQ RGQFNYSDAD DLLRLCSDHG MCVRGHCIFW EVDNAVQQWV KTLSTDDLSA
501: AVSNRINGLL TRYKGKFKHY DVNNEMLHGS FYQDKLGKDI RATMFKTASE LDPDALLFVN DYNVESMCDI HATPEAYIQQ IMGLQEQGAP VGGVGLQGHV
601: SNPVGPVIRS MLDRLAVLGL PLWFTELDVS SANEHVRADD LEVMLREAYA HPAVEGVMLW GFWELFMSRD DAHLVDAEGQ VNEAGRRLLQ LKREWLTHSH
701: GHADENGEYK FRGHHGEYHV DVTTPTGKVS QTFTVDKDDA PLVLNIKV

Best Arabidopsis Sequence Match ( AT4G08160.1 )
(BLAST)

001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL

Arabidopsis Description

Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.