Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
22291199
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 87.1 | 85.22 |
| Os10t0351700-01 | Rice | plasma membrane | 75.38 | 76.42 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 73.34 | 73.85 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 73.17 | 73.42 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 73.34 | 72.97 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 72.33 | 72.95 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 72.5 | 72.74 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 72.5 | 72.74 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 73.51 | 71.1 |
| Zm00001d028103_P001 | Maize | extracellular, vacuole | 50.08 | 50.86 |
| Zm00001d048151_P001 | Maize | vacuole | 48.22 | 48.88 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 47.03 | 48.68 |
| KRH29254 | Soybean | cytosol | 46.01 | 47.88 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 44.14 | 47.19 |
| AT4G33830.1 | Thale cress | vacuole | 45.84 | 46.88 |
| AT4G33840.1 | Thale cress | vacuole | 45.84 | 46.88 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.33 | 46.6 |
| Bra034585.1-P | Field mustard | vacuole | 45.33 | 46.6 |
| CDY69164 | Canola | vacuole | 44.99 | 46.25 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 45.16 | 46.18 |
| CDY28323 | Canola | vacuole | 43.63 | 46.14 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 43.63 | 46.14 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 51.1 | 45.74 |
| CDY48434 | Canola | vacuole | 44.48 | 45.72 |
| Bra034584.1-P | Field mustard | vacuole | 44.14 | 45.38 |
| KRH29253 | Soybean | extracellular, vacuole | 43.29 | 45.05 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 45.5 | 45.04 |
| CDY48433 | Canola | vacuole | 43.97 | 44.73 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 43.46 | 44.6 |
| CDY28325 | Canola | vacuole | 43.46 | 44.21 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 41.26 | 44.02 |
| CDY49378 | Canola | plasma membrane, vacuole | 42.61 | 43.88 |
| Solyc01g106990.1.1 | Tomato | vacuole | 41.6 | 42.46 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 40.41 | 40.68 |
| PGSC0003DMT400037865 | Potato | cytosol | 38.54 | 39.96 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 38.37 | 39.17 |
| Bra017609.1-P | Field mustard | nucleus | 43.8 | 38.68 |
| Zm00001d028398_P003 | Maize | golgi, vacuole | 34.3 | 35.63 |
| Zm00001d025082_P002 | Maize | endoplasmic reticulum, extracellular, plastid | 33.96 | 34.78 |
| Zm00001d039958_P001 | Maize | cytosol | 13.92 | 30.71 |
| CDX72434 | Canola | cytosol, vacuole | 43.97 | 29.53 |
| Zm00001d039946_P001 | Maize | cytosol | 20.88 | 29.5 |
| Zm00001d016558_P001 | Maize | plastid | 20.2 | 27.55 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 41.94 | 26.97 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 41.43 | 25.47 |
| Solyc01g106980.1.1 | Tomato | cytosol | 41.6 | 22.19 |
| Zm00001d013561_P001 | Maize | extracellular | 27.16 | 21.39 |
| Zm00001d019586_P008 | Maize | mitochondrion | 26.99 | 14.47 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | UniProt:A0A1R3LXF8 | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | ProteinID:ONM00979.1 | PFAM:PF00331 |
| PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF8 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | UniParc:UPI0002207560 | EnsemblPlantsGene:Zm00001d030468 | EnsemblPlants:Zm00001d030468_P001 | EnsemblPlants:Zm00001d030468_T001 | : |
Description
xylanase1Glycosyl hydrolase family 10 protein
Coordinates
chr1:-:134962829..134965595
Molecular Weight (calculated)
65636.7 Da
IEP (calculated)
9.503
GRAVY (calculated)
-0.219
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVLVEKLLV SVFLAAFYSG CMVVSLEYDH TASIEASVVH CLGDPMKPLY KGGIVQNSEF NSGLMGWSTH RNVKAGVSRS PSGNKFAVVH GAGSYVSSSG
101: KLLPSHSVYQ RIQMQSDRHY SLSAWLQVSN GTSAHVRAVI KSPNGERVIA GAIVAQSGCW SMLKGGMTAY SSGPAEIYFE SHAPVDIWVD SVSLQPFTFD
201: EWDGHTRRSA DKVRRRTVKV VAMGANDKPM AHANVSIELL RLGFPFGNAV TKEILGLPAY EKWFTSRFSV ATFENEMKWY STEWTQNHED YRVPDAMMNL
301: MRKYKIKVRG HNVFWDDQNS QMQWVKPLNL AQLKAAMQKR LKSVVSRYAG KVIHWDVVNE NLHFNFFETK LGPMASAQIY QQVGQLDRNA ILFMNEFNTL
401: EQPGDPNPVP AKYVAKMNQI RGYAGNGGLK LGVGLESHFS TPNIPYMRSS LDTLAKLKLP MWLTEVDVVK SPNQVKYLEQ VLREGFAHPN VDGIVMWAAW
501: HARGCYVMCL TDNSFKNLPV GDLVDKLIAE WKTHRASATT DHNGAVELHL PLGDFKFTVS HPSLKAAAVQ TMTVDNSASA SQHTINVKS
101: KLLPSHSVYQ RIQMQSDRHY SLSAWLQVSN GTSAHVRAVI KSPNGERVIA GAIVAQSGCW SMLKGGMTAY SSGPAEIYFE SHAPVDIWVD SVSLQPFTFD
201: EWDGHTRRSA DKVRRRTVKV VAMGANDKPM AHANVSIELL RLGFPFGNAV TKEILGLPAY EKWFTSRFSV ATFENEMKWY STEWTQNHED YRVPDAMMNL
301: MRKYKIKVRG HNVFWDDQNS QMQWVKPLNL AQLKAAMQKR LKSVVSRYAG KVIHWDVVNE NLHFNFFETK LGPMASAQIY QQVGQLDRNA ILFMNEFNTL
401: EQPGDPNPVP AKYVAKMNQI RGYAGNGGLK LGVGLESHFS TPNIPYMRSS LDTLAKLKLP MWLTEVDVVK SPNQVKYLEQ VLREGFAHPN VDGIVMWAAW
501: HARGCYVMCL TDNSFKNLPV GDLVDKLIAE WKTHRASATT DHNGAVELHL PLGDFKFTVS HPSLKAAAVQ TMTVDNSASA SQHTINVKS
001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA
Arabidopsis Description
1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.