Factsheet for TraesCSU01G021800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	93.5	93.66
TraesCS2A01G584800.1	Wheat	plastid, vacuole	96.07	92.28
Os10t0351700-01	Rice	plasma membrane	76.07	76.59
Zm00001d030468_P001	Maize	cytosol	73.85	73.34
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	75.04	72.92
KRH29254	Soybean	cytosol	45.81	47.35
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	45.98	47.28
AT4G33830.1	Thale cress	vacuole	46.5	47.22
AT4G33840.1	Thale cress	vacuole	45.47	46.18
Bra034585.1-P	Field mustard	vacuole	44.96	45.9
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	44.79	45.72
CDY69164	Canola	vacuole	44.62	45.55
CDY28323	Canola	vacuole	43.25	45.42
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	42.56	45.19
AT4G33860.1	Thale cress	plasma membrane, vacuole	44.27	44.97
CDY48434	Canola	vacuole	43.59	44.5
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	43.59	44.43
CDY48433	Canola	vacuole	43.93	44.39
CDY28325	Canola	vacuole	43.76	44.21
KRH29253	Soybean	extracellular, vacuole	42.73	44.17
Bra034584.1-P	Field mustard	vacuole	43.25	44.15
VIT_03s0091g00900.t01	Wine grape	cytosol	41.37	43.45
VIT_03s0091g00880.t01	Wine grape	vacuole	43.76	43.03
CDY49378	Canola	plasma membrane, vacuole	42.05	43.01
Solyc01g106990.1.1	Tomato	vacuole	41.71	42.29
VIT_03s0091g00950.t01	Wine grape	cytosol	39.83	42.21
PGSC0003DMT400037865	Potato	cytosol	39.32	40.49
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	40.34	40.34
Solyc05g051260.2.1	Tomato	golgi, vacuole	39.66	40.21
Bra017609.1-P	Field mustard	nucleus	43.08	37.78
CDX72434	Canola	cytosol, vacuole	43.59	29.08
GSMUA_Achr1P12520_001	Banana	mitochondrion	41.54	26.53
GSMUA_Achr1P12510_001	Banana	cytosol	39.83	24.32
Solyc01g106980.1.1	Tomato	cytosol	41.03	21.74

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331	PFscan:PS51257	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF8	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCSU01G021800	EnsemblPlants:TraesCSU01G021800.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:23651880..23654762

Molecular Weight (calculated)

65009.6 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.258

Length

585 amino acids

Sequence
(BLAST)

001: MRNFVEKLVL SLLWISLFQG CMVQSVEYDH TASIECLRDP MKPLYKGGII QNSEFNNGLM GWSTYRNIKA GVGKSASGNR FAVVQGAISS LFSAAGDAAA
101: LQSHSVYQKV QMQGDTHYSL SAWLQVSAGT AHVRAVVKAP NGENITAGGI DAQSGCWTML KGGMTAHAYH SGQGEVFFES DTPVDIWVDS VSLQPFSFDE
201: WDAHARRSAH KVRRSTVKVV VRGPDGQPMP NTSVSIQLLR TGFPFGNTMT KEIISNPAYE KWFFSRFTVA TMENEMKWYS TEWNQNQEDY KIPDDMLKMA
301: QKYGVKVRGH NVFWDDQNSQ IKWVRPMGVD QLKAAMQKRL KSVVSRYAGK VIHWDVLNEN LHFNFFETKL GPNASPMIYQ QVGQIDHNAV LFMNEFNTLE
401: QPMDPNGTPA KYVAKIKLIQ GYPGNGGLKL GVGLESHFST PNIPYVRGAL DTLAQLKLPM WMTEVDVVKG PNQVKYLEQV LREGYGHPGV QGIVMWAAWH
501: ANGCYVMCLT DNTFKNLPVG ALVDKLIAEW KTHPTSATTD ANGFVELDLA HGDYKLTVNH PSSLATSHTI TVDAASSEHT ISLKV

Best Arabidopsis Sequence Match ( AT2G14690.1 )
(BLAST)

001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA

Arabidopsis Description

1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.