Factsheet for HORVU2Hr1G122890.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G021800.1	Wheat	extracellular, vacuole	93.66	93.5
TraesCS2A01G584800.1	Wheat	plastid, vacuole	93.84	89.98
HORVU5Hr1G056740.1	Barley	vacuole	84.76	83.61
Os10t0351700-01	Rice	plasma membrane	75.0	75.39
Zm00001d030468_P001	Maize	cytosol	72.95	72.33
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	74.49	72.26
HORVU2Hr1G113150.1	Barley	cytosol	59.25	64.55
HORVU1Hr1G023120.1	Barley	extracellular	62.5	63.48
HORVU4Hr1G070260.12	Barley	vacuole	51.88	49.59
KRH29254	Soybean	cytosol	46.75	48.23
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	46.23	47.45
AT4G33830.1	Thale cress	vacuole	45.72	46.35
CDY28323	Canola	vacuole	43.49	45.6
Bra034585.1-P	Field mustard	vacuole	44.69	45.55
AT4G33840.1	Thale cress	vacuole	44.86	45.49
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	44.52	45.38
CDY69164	Canola	vacuole	44.35	45.2
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	42.64	45.19
CDY48434	Canola	vacuole	44.01	44.85
KRH29253	Soybean	extracellular, vacuole	43.32	44.7
Bra034584.1-P	Field mustard	vacuole	43.66	44.5
AT4G33860.1	Thale cress	plasma membrane, vacuole	43.66	44.27
VIT_03s0091g00900.t01	Wine grape	cytosol	41.61	43.63
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	42.47	43.21
VIT_03s0091g00880.t01	Wine grape	vacuole	44.01	43.19
CDY28325	Canola	vacuole	42.81	43.18
CDY48433	Canola	vacuole	42.81	43.18
CDY49378	Canola	plasma membrane, vacuole	41.44	42.31
VIT_03s0091g00950.t01	Wine grape	cytosol	39.73	42.03
Solyc01g106990.1.1	Tomato	vacuole	40.41	40.9
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	40.24	40.17
PGSC0003DMT400037865	Potato	cytosol	38.36	39.44
Solyc05g051260.2.1	Tomato	golgi, vacuole	38.36	38.82
Bra017609.1-P	Field mustard	nucleus	42.47	37.18
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	32.88	31.79
HORVU4Hr1G063790.23	Barley	vacuole	30.48	31.34
CDX72434	Canola	cytosol, vacuole	42.81	28.51
HORVU5Hr1G106250.2	Barley	cytosol, mitochondrion, vacuole	25.34	28.46
HORVU5Hr1G106280.1	Barley	cytosol, extracellular, vacuole	26.03	27.74
HORVU5Hr1G106270.1	Barley	extracellular, vacuole	26.2	27.18
GSMUA_Achr1P12520_001	Banana	mitochondrion	41.78	26.64
HORVU5Hr1G106210.1	Barley	cytosol, extracellular	25.86	26.63
GSMUA_Achr1P12510_001	Banana	cytosol	40.24	24.53
HORVU3Hr1G007460.1	Barley	cytosol	26.37	22.85
HORVU4Hr1G003220.3	Barley	cytosol	27.23	21.54
HORVU3Hr1G007470.1	Barley	extracellular, plastid, vacuole	25.34	21.23
Solyc01g106980.1.1	Tomato	cytosol	39.9	21.11
HORVU5Hr1G106260.1	Barley	cytosol	13.01	21.05
HORVU2Hr1G021350.12	Barley	mitochondrion	27.4	14.51

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	UniProt:A0A287JR38	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	EnsemblPlantsGene:HORVU2Hr1G122890	EnsemblPlants:HORVU2Hr1G122890.1	InterPro:IPR001000	InterPro:IPR008979
PFAM:PF00331	PFscan:PS51257	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF8	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI000B4672C0	:	:

Description

No Description!

Coordinates

chrchr2H:-:754193353..754196120

Molecular Weight (calculated)

65105.5 Da

IEP (calculated)

7.077

GRAVY (calculated)

-0.323

Length

584 amino acids

Sequence
(BLAST)

001: MRNFGEKLVL FLLWISLFQG CMVQSVEYDH TASIECLRDP MKPLYKGGII QNSEFNNGLM GWSTYRNNKA GIGKSASGNR FAMVQGAISS LFSAGDSAAS
101: QSHSVYQKVQ MQGDTHYSLS AWLQVSAGTA HVRAVVKAPN GENITAGAID AQSGCWTMLK GGMTAHAYHS GQGEVFFESD TPVDIWVDSV SLQPFSFDEW
201: DAHARRSADK ARRSTVKVVA RGPDGQPMAN TNVSIQLVRT GFPFGNTMTK EILNLPAYEK WFFSRFTVAT MENEMKWYST EWNQNQEDYH IPDDMLKLAE
301: KHGIKVRGHN VFWDDQNSQI KWVRPMGVDQ LKAAMQKRLK SVVSRYAGKV IHWDVLNENL HFNFFETKLG PNASPMIYQQ VGQIDHNAVL FMNEFNTLEQ
401: PMDPNGTPTK YIAKMKLIQG YPGNGGLKMG VGLESHFSTP NVPYVRGALD PLAQLKLPMW MTEVDVVKGP NQVKYLEQVL REGYGHPGVE GIVMWAAWHA
501: NGCYVMCLTD NNFKNLPVGA LVDKLIEEWK THKTSATTDA NGLVEFDLAH GDYKLTVNHP SSLATSHTIT VDAASSEQTI NLKV

Best Arabidopsis Sequence Match ( AT2G14690.1 )
(BLAST)

001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA

Arabidopsis Description

1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.