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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • extracellular 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
MultiLoc:vacuole
Plant-mPloc:extracellular
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33840.1 Solyc04g008430.1.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g106990.1.1 Tomato vacuole 44.38 84.92
VIT_03s0091g00950.t01 Wine grape cytosol 25.82 51.63
VIT_03s0091g00890.t01 Wine grape extracellular, vacuole 25.63 51.36
Solyc01g107000.1.1 Tomato endoplasmic reticulum 26.0 49.06
VIT_03s0091g00880.t01 Wine grape vacuole 26.27 48.74
KRH29254 Soybean cytosol 24.82 48.41
VIT_03s0091g00900.t01 Wine grape cytosol 24.37 48.29
GSMUA_Achr1P12520_001 Banana mitochondrion 39.49 47.6
AT4G33860.1 Thale cress plasma membrane, vacuole 24.82 47.57
AT4G33840.1 Thale cress vacuole 24.73 47.4
CDY28323 Canola vacuole 23.46 46.5
CDY48434 Canola vacuole 24.09 46.42
GSMUA_Achr1P12500_001 Banana extracellular, vacuole 23.82 46.22
Bra034584.1-P Field mustard vacuole 23.91 46.07
CDY28324 Canola endoplasmic reticulum, extracellular, vacuole 23.73 45.72
CDY69164 Canola vacuole 23.64 45.55
Bra034586.1-P Field mustard endoplasmic reticulum, vacuole 23.64 45.47
Solyc05g051260.2.1 Tomato golgi, vacuole 23.73 45.41
Bra034585.1-P Field mustard vacuole 23.55 45.38
CDY48433 Canola vacuole 23.64 45.08
CDY49378 Canola plasma membrane, vacuole 23.28 44.93
Os03t0201901-00 Rice cytosol 23.19 44.91
AT4G33830.1 Thale cress vacuole 23.37 44.79
KXG39936 Sorghum extracellular, vacuole 23.37 44.71
CDY28325 Canola vacuole 23.37 44.56
Os03t0201500-01 Rice vacuole 23.01 44.25
EER92683 Sorghum vacuole 23.37 44.18
Zm00001d028103_P001 Maize extracellular, vacuole 23.19 44.14
TraesCS4B01G259100.1 Wheat vacuole 22.74 44.04
TraesCS4D01G259500.1 Wheat endoplasmic reticulum, extracellular, vacuole 22.74 44.04
KRH29253 Soybean extracellular, vacuole 22.55 43.99
TraesCS4A01G045500.1 Wheat endoplasmic reticulum, extracellular, vacuole 22.64 43.55
HORVU2Hr1G113150.1 Barley cytosol 20.92 43.1
Os10t0351700-01 Rice plasma membrane 22.64 43.03
TraesCS4B01G259400.1 Wheat vacuole 22.28 42.2
TraesCS4A01G045800.1 Wheat vacuole 22.28 42.2
TraesCS4D01G259100.1 Wheat vacuole 22.28 42.2
Zm00001d048151_P001 Maize vacuole 22.01 41.82
Zm00001d030468_P001 Maize cytosol 22.19 41.6
TraesCSU01G021800.1 Wheat extracellular, vacuole 21.74 41.03
TraesCS5A01G196500.1 Wheat plasma membrane, vacuole 21.74 40.89
TraesCS5A01G196600.1 Wheat plasma membrane, vacuole 21.74 40.89
TraesCS5D01G194800.1 Wheat plasma membrane, vacuole 21.65 40.72
HORVU5Hr1G056740.1 Barley vacuole 21.83 40.71
KXG34533 Sorghum endoplasmic reticulum, plasma membrane, vacuole 22.01 40.37
HORVU1Hr1G023120.1 Barley extracellular 21.01 40.35
HORVU4Hr1G070260.12 Barley vacuole 22.19 40.1
TraesCS1B01G124500.1 Wheat endoplasmic reticulum, extracellular, vacuole 20.83 40.07
HORVU2Hr1G122890.1 Barley endoplasmic reticulum, plasma membrane, vacuole 21.11 39.9
TraesCS1D01G107700.1 Wheat extracellular, vacuole 20.74 39.9
TraesCS2B01G537100.1 Wheat vacuole 20.74 39.9
TraesCS2D01G510500.1 Wheat vacuole 20.74 39.9
Bra017609.1-P Field mustard nucleus 24.09 39.88
TraesCS1A01G107100.1 Wheat extracellular, vacuole 20.65 39.72
Solyc01g105500.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 20.29 39.02
Zm00001d048152_P001 Maize cytosol, extracellular, vacuole 23.1 38.75
TraesCS2A01G584800.1 Wheat plastid, vacuole 21.29 38.59
Os03t0201800-01 Rice extracellular 19.66 37.29
Os10t0351600-00 Rice cytosol 19.66 36.97
EER92684 Sorghum endoplasmic reticulum, extracellular, vacuole 18.66 36.01
Solyc10g055340.1.1 Tomato cytosol 6.79 34.09
Solyc01g111340.2.1 Tomato extracellular 16.85 34.0
Solyc11g043160.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 17.84 33.97
Solyc11g040330.1.1 Tomato extracellular 16.67 33.52
Solyc10g055370.1.1 Tomato vacuole 15.94 31.37
CDX72434 Canola cytosol, vacuole 23.91 30.1
GSMUA_Achr1P12510_001 Banana cytosol 20.11 23.17
Solyc04g077200.1.1 Tomato cytosol 1.63 17.48
Solyc12g088210.1.1 Tomato mitochondrion 12.32 14.77
Solyc04g077190.2.1 Tomato extracellular 14.31 13.81
Protein Annotations
Gene3D:2.60.120.260Gene3D:3.20.20.80MapMan:35.1InterPro:CenC_carb-bdInterPro:GH10GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005488GO:GO:0005506GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016702GO:GO:0016787GO:GO:0016798GO:GO:0055114InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SFInterPro:IPR001000InterPro:IPR008979UniProt:K4B2R5PFAM:PF00331PFAM:PF02018
PFscan:PS51760PANTHER:PTHR31490PANTHER:PTHR31490:SF2SMART:SM00633SUPFAM:SSF49785SUPFAM:SSF51445
EnsemblPlantsGene:Solyc01g106980.1EnsemblPlants:Solyc01g106980.1.1UniParc:UPI0002767AA0SEG:seg::
Description
No Description!
Coordinates
chr1:-:94677064..94683698
Molecular Weight (calculated)
122697.0 Da
IEP (calculated)
7.525
GRAVY (calculated)
-0.300
Length
1104 amino acids
Sequence
(BLAST)
0001: MCLKTPLKPQ YNGGIVTNPE FNDGLNGWAV FGVAKVENNI SSDGNKFIVA SERKGPYHGF SQEFQLDKDK FYIVSGWVQV NHGDDATVAV IFKTQSGYQH
0101: AAWANAKSGC WSMFKGGLVV NVSGPAQLYF ETNNTVVDIW IDNISVQPFS QEEWTSHQTQ TIEKVRKSKV AVQVVDSQGK ALPNATISLI QARANFPFGC
0201: AINKNILNNN AYQNWFFSRF KYTVFEDEMK WYSNENTQGK VDYSTSDAMV NLCKSKGVSI RGQNVLWDDQ KFQPNWVPAL SPQQLSVAAG KRVASVVRKY
0301: KGQLLHWDVM NENLHFKFFE SKLGPSASAT FYRLASQFDN KTPLFLNDYN TIEVPSDGQS SPANYLSMIK QVRTGGYAGT LGIGLEGHFG APSIPYIRAG
0401: LDTLASAKLP MWITELDVRP EQNQAQVLDQ VIKEIIAHPA VQGLIIWSAW KPNGCFRMCL TDNNFKNLPT GDVVDKARTS LSHEGLIGTT NAEGYFETSL
0501: FHGDYKAIVT HPSITDSSFH HNLTVTPMAE SDEKLSLTYK FTAMLNISKI SLLTVLSFIT CLKNPLKPQY NGRIVTNPEF NDGLNGWDVQ GVAKVENNVS
0601: SDGNKFIVAS ERKGPYHGLS QEFQLDKDKF YVVSGWAQVN HGDDATVAVI FKTQSGYQHA AWANAKSGCW SMFKGGLVVN ASGPAQLNFE TNNTAVDIWI
0701: DSISVQPFGQ EEWTSHQTQT IEKVRKSKVA IQVVDSQGKA LPNATISLIQ ARANFPFGCA INKNILNNNA YQNWFFSRFK YTVFEDEMKW YSTETSQGKV
0801: DYSTSDAMVN LCKSKGVSIR GHNILWDDPK FQPNWVPSLS SQQLSAAAGR RVGSVVAKYR GQVIHWDVMN ENLHFNFFES KLGAGASATF YRLAAQFDNK
0901: TPLFLNEFNT IEDQRDAASS PANYLSKIRQ IRAGGYKGSL GIGLEGHFIT PNQAYIRSAI DTLASAKLPI WITELDVQSS PNQAQFLDQI IKEVVGHPAV
1001: EGLIIWSAWK PTGCYKMCLT DNNFKNLATG DAVDKIRVSL THEDLVGTTN AEGYFETSLF HGDYKAIVTH PTMVVSSFHH NLTVMPTTSE SSSERGFSYK
1101: FTAA
Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.