Factsheet for TraesCS2D01G510500.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G537100.1	Wheat	vacuole	97.39	97.39
HORVU2Hr1G113150.1	Barley	cytosol	86.41	92.54
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	75.61	75.61
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	61.15	59.8
Os10t0351600-00	Rice	cytosol	55.75	54.51
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.35	50.7
TraesCS4D01G259100.1	Wheat	vacuole	50.17	49.4
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	47.04	47.45
KRH29254	Soybean	cytosol	45.12	45.76
AT4G33830.1	Thale cress	vacuole	44.95	44.79
AT4G33840.1	Thale cress	vacuole	44.25	44.1
VIT_03s0091g00880.t01	Wine grape	vacuole	45.64	44.03
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	43.55	43.63
CDY69164	Canola	vacuole	43.55	43.63
Bra034585.1-P	Field mustard	vacuole	43.21	43.28
VIT_03s0091g00950.t01	Wine grape	cytosol	41.46	43.12
CDY28323	Canola	vacuole	41.64	42.91
KRH29253	Soybean	extracellular, vacuole	42.16	42.76
VIT_03s0091g00900.t01	Wine grape	cytosol	41.29	42.55
AT4G33860.1	Thale cress	plasma membrane, vacuole	42.68	42.53
CDY48434	Canola	vacuole	42.33	42.41
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	40.59	42.29
Bra034584.1-P	Field mustard	vacuole	41.99	42.06
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	41.46	41.46
CDY48433	Canola	vacuole	41.81	41.45
CDY28325	Canola	vacuole	41.12	40.76
CDY49378	Canola	plasma membrane, vacuole	39.9	40.03
Solyc01g106990.1.1	Tomato	vacuole	40.24	40.03
PGSC0003DMT400037865	Potato	cytosol	39.02	39.44
Solyc05g051260.2.1	Tomato	golgi, vacuole	39.37	39.17
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	39.37	38.63
TraesCS4D01G227700.1	Wheat	plasma membrane, vacuole	35.89	36.72
Bra017609.1-P	Field mustard	nucleus	41.81	35.98
TraesCS2D01G060800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	34.15	31.66
CDX72434	Canola	cytosol, vacuole	42.86	28.05
TraesCS5D01G449000.1	Wheat	cytosol	26.48	27.44
TraesCS5D01G448800.1	Wheat	cytosol	26.13	27.42
TraesCS3D01G041700.1	Wheat	cytosol	26.31	26.77
TraesCS5D01G448600.1	Wheat	cytosol	25.44	26.59
GSMUA_Achr1P12520_001	Banana	mitochondrion	42.33	26.53
GSMUA_Achr1P12510_001	Banana	cytosol	41.99	25.16
TraesCS4D01G019500.1	Wheat	cytosol	29.09	22.97
TraesCS3D01G041600.1	Wheat	extracellular, vacuole	24.22	21.52
Solyc01g106980.1.1	Tomato	cytosol	39.9	20.74
TraesCS1D01G329900.1	Wheat	peroxisome	2.44	15.73
TraesCS2D01G124900.1	Wheat	mitochondrion	26.13	13.64

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331
PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF8	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G510500	EnsemblPlants:TraesCS2D01G510500.1	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:602450500..602453450

Molecular Weight (calculated)

62981.3 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.091

Length

574 amino acids

Sequence
(BLAST)

001: MGRLIFIFLL SISLFEGWMV QSVPYDHTAS LECLSSPMRS LYKGGILQNS EFDSGLMGWL VPPGVKAAVN SSQSGNKFAD AKNKDQPSRG VYQKIHLKTN
101: HHYSLSAWLQ VSSGTAVVKA IFKAPNGAYI GGGAVVAKAG CWSMLKGGMT AYSSGPAEFF FEADGATVDI LVDSVSLQPF TFAEWKNHTS LSAAKVRKSA
201: VKVVARGADG NPLANAELSL KLLRPGFPLG NAMTAEILNI PAYEKWFTSR FTVASFENAM KWYSTEWKRN QENYSVPDAM LALAQRHGIK VRGHNVFWDT
301: NNTQMAWVNP LGADELKAAM QKRLSSVVTR YAGKVIAWDV VNENLHGQFY EGRLGANVSA ELYGEVAKID ANATLFMNEY GTLEWALDLT AMASKYAAKM
401: EQIRSYPGNA GIKLAVGLES HFETPNIPYM RATLDMLAQL KVPIWLTEID VSPKTGPYQV EYLEDVLREG YGHPNVEGMV LWAAWHKHGC WVMCLTDNNF
501: TNLPAGNVVD KLIAEWKTHP VAATMDANGV AELNLVHGEY KFTVTHPSLE SPTAHTLTVD AASSALEHAI DIKV

Best Arabidopsis Sequence Match ( AT4G33810.5 )
(BLAST)

001: MKPPRSSETK GLLQFSRSVE DDSDEEWKID GSGSIREMTQ RIQLHEGNIY SFSAWVKLRE GNNKKVGVVF RTENGRFVHG GEVRAKKRCW TLLKGGIVPD
101: VSGSVDIFFE SDDKEAKISA SDVSLKQFSK QEWKLKQDQL IEKIRKSKVR FEVTYQNKTA VKGAVISIEQ TKPSFLLGCA MNFRILQSEG YRNWFASRFK
201: ITSFTNEMKW YTTEKERGHE NYTAADSMLK FAEENGILVR GHTVLWDDPL MQPTWVPKIE DPNDLMNVTL NRINSVMTRY KGKLTGWDVV NENVHWDYFE
301: KMLGANASSS FYNLAFKLDP DVTMFVNEYN TIENRVEVTA TPVKVKEKME EILAYPGNMN IKGAIGAQGH FRPTQPNLAY MRSALDTLGS LGLPIWLTEV
401: DMPKCPNQEV YIEEILREAY SHPAVKGIII FAGPEVSGFD KLTLADKYFN NTATGDVIDK LLKEWQQSSE IPKIFMTDSE NDEEEVSLLH GHYNVNVSHP
501: WMKNMSTSFS LEVTKEMGQR QVVRVVINA

Arabidopsis Description

Glycosyl hydrolase superfamily protein [Source:TAIR;Acc:AT4G33810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.