Factsheet for TraesCS1D01G107700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

mitochondrion 1
vacuole 4
extracellular 4
endoplasmic reticulum 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	96.52	96.52
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	95.47	95.47
HORVU1Hr1G023120.1	Barley	extracellular	89.37	89.22
TraesCS2D01G510500.1	Wheat	vacuole	75.61	75.61
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	62.72	61.33
Os10t0351600-00	Rice	cytosol	57.32	56.05
TraesCS4D01G259100.1	Wheat	vacuole	53.14	52.32
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.92	52.28
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	48.43	48.86
KRH29254	Soybean	cytosol	45.99	46.64
AT4G33830.1	Thale cress	vacuole	46.52	46.35
AT4G33840.1	Thale cress	vacuole	45.82	45.66
CDY69164	Canola	vacuole	45.47	45.55
CDY28323	Canola	vacuole	44.08	45.42
Bra034585.1-P	Field mustard	vacuole	45.3	45.38
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	45.12	45.2
CDY48434	Canola	vacuole	44.6	44.68
VIT_03s0091g00880.t01	Wine grape	vacuole	46.17	44.54
AT4G33860.1	Thale cress	plasma membrane, vacuole	44.6	44.44
VIT_03s0091g00900.t01	Wine grape	cytosol	43.03	44.34
Bra034584.1-P	Field mustard	vacuole	44.25	44.33
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	42.16	43.92
KRH29253	Soybean	extracellular, vacuole	42.51	43.11
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	42.86	42.86
CDY48433	Canola	vacuole	43.03	42.66
CDY49378	Canola	plasma membrane, vacuole	42.51	42.66
VIT_03s0091g00950.t01	Wine grape	cytosol	40.77	42.39
CDY28325	Canola	vacuole	42.51	42.14
Solyc05g051260.2.1	Tomato	golgi, vacuole	40.59	40.38
Solyc01g106990.1.1	Tomato	vacuole	40.59	40.38
PGSC0003DMT400037865	Potato	cytosol	39.72	40.14
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	40.77	40.0
Bra017609.1-P	Field mustard	nucleus	43.9	37.78
TraesCS4D01G227700.1	Wheat	plasma membrane, vacuole	35.19	36.01
TraesCS2D01G060800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	36.76	34.09
CDX72434	Canola	cytosol, vacuole	44.43	29.08
GSMUA_Achr1P12520_001	Banana	mitochondrion	44.25	27.73
TraesCS5D01G448800.1	Wheat	cytosol	25.44	26.69
TraesCS5D01G448600.1	Wheat	cytosol	25.44	26.59
TraesCS5D01G449000.1	Wheat	cytosol	25.44	26.35
GSMUA_Achr1P12510_001	Banana	cytosol	43.21	25.89
TraesCS3D01G041700.1	Wheat	cytosol	24.91	25.35
TraesCS3D01G041600.1	Wheat	extracellular, vacuole	24.22	21.52
TraesCS4D01G019500.1	Wheat	cytosol	26.66	21.05
Solyc01g106980.1.1	Tomato	cytosol	39.9	20.74
TraesCS1D01G329900.1	Wheat	peroxisome	2.44	15.73
TraesCS2D01G124900.1	Wheat	mitochondrion	25.26	13.18

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331	PFscan:PS51760	PANTHER:PTHR31490
PANTHER:PTHR31490:SF8	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1D01G107700
EnsemblPlants:TraesCS1D01G107700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:100660999..100663121

Molecular Weight (calculated)

63335.4 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.135

Length

574 amino acids

Sequence
(BLAST)

001: MGKLLTFLLC ISLFEGWMVQ SVPYDYTASI KCLSSPIRAL YKGGIIENSE FNSGLTGWSV PWGVTANVSS SPSGNNFALA SASNNGQPSR SVYQKIQMET
101: AHHYSLSAWL QVSSGTAVVR AVFKDPNGAF IAGGATVARS GCWSMLKGGM TAFASGPGEL FFEADGRVDI WVDSVSLQPF SFPEWEEHRR LSAGKARRSV
201: VKVVARAADG VPLPNANVSV KLLRPGFPFG NAMTKEILDI PAYEQWFASR FTVASFENEM KWYSTEWMEN HEDYTVADAM LRLAQKHGIA VRGHNVLWDT
301: NDTQVSWVKP LDAQRLKAAL QKRISSVVSR YAGKVIAWDV VNENLHGQFF ESRLGRNASS EVYQRVARID RTARLFMNEF GTLEEPLDAA AISSKYVAKL
401: KQIRSYPGNR GIKLAVGLES HFGTPNIPYM RATLDMLAQL RVPIWLTEVD VGPKGAPYVP VYLEEVLREG YGHPNVEGMV MWAAWHAQGC WVMCLTDNNF
501: NNLPAGDRVD KLIAEWRAHP EGATMDANGV TELDLVHGEY NFTVTHPSLG SPAVRTLTVD ASSSAVEHTI DIKV

Best Arabidopsis Sequence Match ( AT4G33810.1 )
(BLAST)

001: MKPPRSSETK GLLQFSRSVE DDSDEEWKID GSGSIREMTQ RIQLHEGNIY SFSAWVKLRE GNNKKVGVVF RTENGRFVHG GEVRAKKRCW TLLKGGIVPD
101: VSGSVDIFFE SDDKEAKISA SDVSLKQFSK QEWKLKQDQL IEKIRKSKVR FEVTYQNKTA VKGAVISIEQ TKPSFLLGCA MNFRILQSEG YRNWFASRFK
201: ITSFTNEMKW YTTEKERGHE NYTAADSMLK FAEENGILVR GHTVLWDDPL MQPTWVPKIE DPNDLMNVTL NRINSVMTRY KGKLTGWDVV NENVHWDYFE
301: KMLGANASSS FYNLAFKLDP DVTMFVNEYN TIENRVEVTA TPVKVKEKME EILAYPGNMN IKGAIGAQGH FRPTQPNLAY MRSALDTLGS LGLPIWLTEV
401: DMPKCPNQEV YIEEILREAY SHPAVKGIII FAGPEVSGFD KLTLADKYFN NTATGDVIDK LLKEWQQSSE IPKIFMTDSE NDEEEVSLLH GHYNVNVSHP
501: WMKNMSTSFS LEVTKEMGQR QVVRVVINA

Arabidopsis Description

Glycosyl hydrolase superfamily protein [Source:TAIR;Acc:AT4G33810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.