Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- vacuole 3
- cytosol 1
- extracellular 3
- endoplasmic reticulum 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 63.16 | 63.04 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 67.51 | 62.52 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 61.52 | 60.86 |
| KRH29254 | Soybean | cytosol | 56.26 | 54.77 |
| CDY69164 | Canola | vacuole | 56.08 | 53.93 |
| CDY28323 | Canola | vacuole | 54.45 | 53.86 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.72 | 53.58 |
| Bra034585.1-P | Field mustard | vacuole | 55.54 | 53.4 |
| CDY48434 | Canola | vacuole | 55.54 | 53.4 |
| Bra034584.1-P | Field mustard | vacuole | 54.81 | 52.71 |
| AT4G33840.1 | Thale cress | vacuole | 54.63 | 52.26 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 54.45 | 52.08 |
| KRH29253 | Soybean | extracellular, vacuole | 53.36 | 51.94 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 53.54 | 51.85 |
| AT4G33830.1 | Thale cress | vacuole | 53.54 | 51.22 |
| CDY49378 | Canola | plasma membrane, vacuole | 52.99 | 51.05 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 53.18 | 51.05 |
| CDY48433 | Canola | vacuole | 53.36 | 50.78 |
| CDY28325 | Canola | vacuole | 52.09 | 49.57 |
| Solyc01g106990.1.1 | Tomato | vacuole | 51.0 | 48.7 |
| Os03t0201901-00 | Rice | cytosol | 50.27 | 48.6 |
| Zm00001d028103_P001 | Maize | extracellular, vacuole | 50.82 | 48.28 |
| KXG39936 | Sorghum | extracellular, vacuole | 50.45 | 48.18 |
| Os03t0201500-01 | Rice | vacuole | 49.36 | 47.39 |
| EER92683 | Sorghum | vacuole | 49.91 | 47.09 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 49.73 | 46.84 |
| PGSC0003DMT400037865 | Potato | cytosol | 47.91 | 46.48 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 48.64 | 46.45 |
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 47.91 | 46.32 |
| TraesCS4B01G259100.1 | Wheat | vacuole | 47.91 | 46.32 |
| TraesCS4D01G259100.1 | Wheat | vacuole | 49.0 | 46.31 |
| TraesCS4B01G259400.1 | Wheat | vacuole | 49.0 | 46.31 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 47.73 | 45.82 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 48.46 | 45.8 |
| Zm00001d048151_P001 | Maize | vacuole | 48.09 | 45.61 |
| Os10t0351700-01 | Rice | plasma membrane | 47.73 | 45.27 |
| Bra017609.1-P | Field mustard | nucleus | 54.45 | 44.98 |
| Zm00001d030468_P001 | Maize | cytosol | 47.19 | 44.14 |
| HORVU2Hr1G113150.1 | Barley | cytosol | 42.65 | 43.84 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 46.64 | 43.78 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 46.46 | 43.61 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 46.46 | 43.61 |
| HORVU4Hr1G070260.12 | Barley | vacuole | 48.28 | 43.54 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 46.64 | 43.41 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 47.37 | 43.36 |
| TraesCS1B01G124500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.46 | 42.68 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 45.19 | 42.64 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 45.19 | 42.56 |
| HORVU1Hr1G023120.1 | Barley | extracellular | 44.28 | 42.43 |
| TraesCS1D01G107700.1 | Wheat | extracellular, vacuole | 43.92 | 42.16 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 43.74 | 41.99 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 49.91 | 41.79 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 45.01 | 40.72 |
| TraesCS2D01G510500.1 | Wheat | vacuole | 42.29 | 40.59 |
| TraesCS2B01G537100.1 | Wheat | vacuole | 42.29 | 40.59 |
| EER92684 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 41.02 | 39.51 |
| Os10t0351600-00 | Rice | cytosol | 41.74 | 39.18 |
| Os03t0201800-01 | Rice | extracellular | 38.66 | 36.6 |
| CDX72434 | Canola | cytosol, vacuole | 53.54 | 33.64 |
| VIT_03s0038g02180.t01 | Wine grape | cytosol | 35.21 | 31.04 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 48.64 | 29.26 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 45.73 | 26.3 |
| Solyc01g106980.1.1 | Tomato | cytosol | 51.36 | 25.63 |
| VIT_18s0001g08370.t01 | Wine grape | mitochondrion | 28.86 | 16.79 |
Protein Annotations
| EntrezGene:100242953 | wikigene:100242953 | Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | ProteinID:CCB47699 |
| ProteinID:CCB47699.1 | InterPro:CenC_carb-bd | UniProt:F6H646 | EMBL:FN595242 | InterPro:GH10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | EntrezGene:LOC100242953 |
| wikigene:LOC100242953 | PFAM:PF00331 | PFAM:PF02018 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 |
| SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | UniParc:UPI0002109578 | ArrayExpress:VIT_03s0091g00890 | EnsemblPlantsGene:VIT_03s0091g00890 |
| EnsemblPlants:VIT_03s0091g00890.t01 | RefSeq:XP_002264605 | RefSeq:XP_002264605.1 | : | : | : |
Description
No Description!
Coordinates
chr3:+:7385745..7389061
Molecular Weight (calculated)
61297.4 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.364
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFGGESLLL LCLANPHKPQ YGGGIIRNPE LNQGLKGWST FGGAKIERRE SGGNHFIVAH SRNQTYGSFS QKLYLQKDKL YTFSAWIQVS GGNAAVAAVF
101: KTSDGFKHAG AIFAESGCWS MLKGGLTMKS SGPADLFFES KNTKVEIWVD SISLQPFIQE QWKSHQDQSI EKTRKTKVRI QAIDARGNPL PGATVQARQQ
201: KLSFPFGNAM NKYILDNPAH QNWFTSRFTA TAFEDALKWY TNEPSPGKED YSDADALFQF SEQNQIAVRG HNILWDDPKY LPGWLLSLSP SQIRSDADKR
301: INSVVQRYIG KVNSWDVVNE NLHTSFFEDK LGPNASAVFF QETRQLDKTT PLFMNEYNTL ENGGDPLSTP AKYIQKLRDI QSFSPDIGSV GIGLQGHFHT
401: PDLAYMRSSL DTLAAAKLPI WITELDVASS PDQASYLEQV LSEAHAHPAV VGIVMWAAWK PEGCFRMCLT DGQFKNLATG DVVDKLISQW TGRFVGMTNA
501: DGFLETSLFH GDYEVSISHP TLKNSSLIHG FKVAPTDHMS QEKEMLVTLS A
101: KTSDGFKHAG AIFAESGCWS MLKGGLTMKS SGPADLFFES KNTKVEIWVD SISLQPFIQE QWKSHQDQSI EKTRKTKVRI QAIDARGNPL PGATVQARQQ
201: KLSFPFGNAM NKYILDNPAH QNWFTSRFTA TAFEDALKWY TNEPSPGKED YSDADALFQF SEQNQIAVRG HNILWDDPKY LPGWLLSLSP SQIRSDADKR
301: INSVVQRYIG KVNSWDVVNE NLHTSFFEDK LGPNASAVFF QETRQLDKTT PLFMNEYNTL ENGGDPLSTP AKYIQKLRDI QSFSPDIGSV GIGLQGHFHT
401: PDLAYMRSSL DTLAAAKLPI WITELDVASS PDQASYLEQV LSEAHAHPAV VGIVMWAAWK PEGCFRMCLT DGQFKNLATG DVVDKLISQW TGRFVGMTNA
501: DGFLETSLFH GDYEVSISHP TLKNSSLIHG FKVAPTDHMS QEKEMLVTLS A
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.