Factsheet for TraesCS4B01G259400.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 7
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G33840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G259100.1	Wheat	vacuole	96.23	96.23
TraesCS4A01G045800.1	Wheat	vacuole	95.2	95.2
HORVU4Hr1G070260.12	Barley	vacuole	92.8	88.54
Os03t0201901-00	Rice	cytosol	74.79	76.49
Zm00001d028103_P001	Maize	extracellular, vacuole	74.1	74.48
EER92683	Sorghum	vacuole	73.07	72.95
Zm00001d048151_P001	Maize	vacuole	70.84	71.08
TraesCS4B01G259100.1	Wheat	vacuole	63.12	64.56
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	51.46	52.72
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.29	52.09
VIT_03s0091g00950.t01	Wine grape	cytosol	49.06	51.81
VIT_03s0091g00900.t01	Wine grape	cytosol	49.06	51.35
KRH29254	Soybean	cytosol	49.4	50.88
AT4G33840.1	Thale cress	vacuole	49.57	50.17
AT4G33830.1	Thale cress	vacuole	49.57	50.17
CDY28323	Canola	vacuole	47.68	49.91
TraesCS2B01G537100.1	Wheat	vacuole	48.89	49.65
CDY48434	Canola	vacuole	48.71	49.56
VIT_03s0091g00880.t01	Wine grape	vacuole	50.43	49.41
CDY69164	Canola	vacuole	48.54	49.39
AT4G33860.1	Thale cress	plasma membrane, vacuole	48.71	49.31
Bra034584.1-P	Field mustard	vacuole	48.2	49.04
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	48.2	49.04
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	46.31	49.0
Bra034585.1-P	Field mustard	vacuole	47.86	48.69
CDY49378	Canola	plasma membrane, vacuole	47.34	48.25
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	46.48	47.21
CDY48433	Canola	vacuole	46.66	46.98
KRH29253	Soybean	extracellular, vacuole	45.28	46.64
CDY28325	Canola	vacuole	46.31	46.63
Solyc01g106990.1.1	Tomato	vacuole	43.05	43.5
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	42.37	42.22
Bra017609.1-P	Field mustard	nucleus	48.2	42.13
PGSC0003DMT400037865	Potato	cytosol	40.31	41.37
Solyc05g051260.2.1	Tomato	golgi, vacuole	39.97	40.38
TraesCS4B01G227000.1	Wheat	vacuole	37.05	38.5
TraesCS2B01G075000.1	Wheat	plastid	36.19	36.63
CDX72434	Canola	cytosol, vacuole	49.4	32.84
GSMUA_Achr1P12520_001	Banana	mitochondrion	47.51	30.24
TraesCS5B01G445500.1	Wheat	cytosol	26.93	28.6
TraesCS5B01G445300.1	Wheat	cytosol	26.93	28.55
TraesCS5B01G445700.1	Wheat	extracellular, plastid, vacuole	27.44	27.59
GSMUA_Achr1P12510_001	Banana	cytosol	44.94	27.35
TraesCS3B01G045600.1	Wheat	mitochondrion	27.62	24.77
TraesCS3B01G045700.2	Wheat	vacuole	26.24	24.68
Solyc01g106980.1.1	Tomato	cytosol	42.2	22.28
TraesCS4B01G021800.1	Wheat	cytosol	27.62	22.15
TraesCS2B01G144300.3	Wheat	mitochondrion	29.33	15.13

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	PFAM:PF00331
PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF13	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4B01G259400	EnsemblPlants:TraesCS4B01G259400.1	SEG:seg

Description

No Description!

Coordinates

chr4B:-:526735899..526740176

Molecular Weight (calculated)

63853.8 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.245

Length

583 amino acids

Sequence
(BLAST)

001: MRASMGRSPS SSVLFLVWAA AALLLNAALT VQSVPYDYSS SSECLAEPLE AHYGGGVIVN SDFSAGLQGW SAFGYGSVTE GASPTGNKYA VAANRTRPYQ
101: SVSQKVYLQN DTHYTLSAWL QVSDRSADVI AVVKTADNFI HAGGVDAKSG CWSILKGGLT PAASGPAELY FESNSTVAIW VDNVSLQPFS KEEWSSHRHA
201: AVKKARKRTV RLRARDAAGN PVPGARVHVR QVRSAFPLGS AMSHEIITNV KYQEWFAKRF TVTTFENEMK WYSTEWTQGH EDYTVPDAML RFAHSHGIAV
301: RGHNVFWDDP NTQLGWVKAL SGDQLRAATA NRMRSVMSRY AGKVIAWDVV NENLHFDFFE EKFGAGASAA FYQKAHGMDG SALMSMNDFN TLEQPGDQSG
401: LPSKYLNKLS QIKDAFPGNG IGVRMAIGLE GHFGANPSIP YVRAALDTLS QAGVPIWLTE IDVKPGPDQA YHLEQVLREV YSHPAVHGIV LWTAWHPQGC
501: YVMCLTDDNF NNLPVGDTVD KLIAEWKTSS HVGVADADGH YEAELFHGDY QVTVTHPAAA ANSTVVQSLR VDRESDNEYT IHV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.