Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G33840.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 98.77 | 98.77 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 98.42 | 97.74 |
| Os03t0201500-01 | Rice | vacuole | 77.54 | 77.0 |
| KXG39936 | Sorghum | extracellular, vacuole | 76.32 | 75.39 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 77.02 | 66.72 |
| TraesCS4B01G259400.1 | Wheat | vacuole | 64.56 | 63.12 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 53.16 | 53.25 |
| TraesCS1B01G124500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 52.28 | 51.92 |
| KRH29254 | Soybean | cytosol | 50.18 | 50.53 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 48.77 | 49.91 |
| AT4G33840.1 | Thale cress | vacuole | 50.35 | 49.83 |
| TraesCS2B01G537100.1 | Wheat | vacuole | 50.0 | 49.65 |
| AT4G33830.1 | Thale cress | vacuole | 50.0 | 49.48 |
| CDY48434 | Canola | vacuole | 49.47 | 49.21 |
| CDY28323 | Canola | vacuole | 48.07 | 49.19 |
| CDY69164 | Canola | vacuole | 49.3 | 49.04 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.3 | 49.04 |
| Bra034584.1-P | Field mustard | vacuole | 49.3 | 49.04 |
| Bra034585.1-P | Field mustard | vacuole | 49.12 | 48.87 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 49.3 | 48.78 |
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 46.49 | 48.01 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 46.32 | 47.91 |
| KRH29253 | Soybean | extracellular, vacuole | 47.37 | 47.7 |
| CDY49378 | Canola | plasma membrane, vacuole | 47.54 | 47.38 |
| VIT_03s0091g00880.t01 | Wine grape | vacuole | 49.3 | 47.23 |
| CDY48433 | Canola | vacuole | 46.14 | 45.42 |
| CDY28325 | Canola | vacuole | 46.14 | 45.42 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 45.61 | 45.3 |
| Solyc01g106990.1.1 | Tomato | vacuole | 44.39 | 43.85 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 43.86 | 42.73 |
| PGSC0003DMT400037865 | Potato | cytosol | 42.11 | 42.25 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 42.11 | 41.59 |
| Bra017609.1-P | Field mustard | nucleus | 48.25 | 41.23 |
| TraesCS4B01G227000.1 | Wheat | vacuole | 37.19 | 37.79 |
| TraesCS2B01G075000.1 | Wheat | plastid | 37.19 | 36.81 |
| CDX72434 | Canola | cytosol, vacuole | 49.12 | 31.93 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 48.42 | 30.13 |
| TraesCS5B01G445300.1 | Wheat | cytosol | 27.02 | 28.0 |
| TraesCS5B01G445500.1 | Wheat | cytosol | 26.84 | 27.87 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 46.14 | 27.45 |
| TraesCS5B01G445700.1 | Wheat | extracellular, plastid, vacuole | 27.54 | 27.07 |
| TraesCS3B01G045700.2 | Wheat | vacuole | 27.37 | 25.16 |
| TraesCS3B01G045600.1 | Wheat | mitochondrion | 27.72 | 24.31 |
| TraesCS4B01G021800.1 | Wheat | cytosol | 30.0 | 23.52 |
| Solyc01g106980.1.1 | Tomato | cytosol | 44.04 | 22.74 |
| TraesCS2B01G144300.3 | Wheat | mitochondrion | 29.65 | 14.96 |
Protein Annotations
| Gene3D:2.60.120.260 | Gene3D:2.60.40.1120 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:Carb-bd-like_fold | InterPro:CenC_carb-bd |
| InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030246 | InterPro:Galactose-bd-like_sf |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 | PFAM:PF02018 | PFscan:PS51760 |
| PANTHER:PTHR31490 | PANTHER:PTHR31490:SF13 | SMART:SM00633 | SUPFAM:SSF49452 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS4B01G259100 | EnsemblPlants:TraesCS4B01G259100.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:526273150..526276031
Molecular Weight (calculated)
62756.9 Da
IEP (calculated)
5.862
GRAVY (calculated)
-0.205
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKLVFLLLW AAALMEGSMV KSLPYDSSAS VECLVEPMEP HYGGGVIVNP DFNAGLRGWS AFGYGTVAEG ASVATGNRYA VAGNRTRPYH SVSQKVYLQN
101: DTHYTLSAWL QVSHGVAADV WAVVKTADDF VHVGGAVAKP GCWSMLKGGF TAANAGRAEI YFESNATVDI WVDSVSLKPF SKEEWAAHRT ESTRAVRRKM
201: VRLQAKDSGG NPLQGAEVSV ENVRSSFPLG AAMSREILTN PGYQQWFTSR FTVTTFENEM KWYSTEPAPG REDYTVPDAM LALAKQHGIG VRGHNVFWDD
301: PKQQPRWVQS LPYPDLLAAA SRRIRSFVSR YAGQVIAWDV VNENLHYSFF ERQFGWDAST AFYAAARLLD SGSALMFMND YNTLEQPGDM AAAPGRYVDR
401: LRQIIASYPE NGAGMAIGLE GHFTTPNIPY MRAALDSLSQ IGLPVWLTEV DVAGGPMQAQ HLEEVLREAY AHPAVQGVIL WSAWRPQGCY VMCLTDNNFK
501: NLPQGDVVDR LLAEWRTAAQ TGTTDEQGYF QAEVAHGDYK VTVSHPSLNT SVSQSVTVDL GSGNHFFIQA
101: DTHYTLSAWL QVSHGVAADV WAVVKTADDF VHVGGAVAKP GCWSMLKGGF TAANAGRAEI YFESNATVDI WVDSVSLKPF SKEEWAAHRT ESTRAVRRKM
201: VRLQAKDSGG NPLQGAEVSV ENVRSSFPLG AAMSREILTN PGYQQWFTSR FTVTTFENEM KWYSTEPAPG REDYTVPDAM LALAKQHGIG VRGHNVFWDD
301: PKQQPRWVQS LPYPDLLAAA SRRIRSFVSR YAGQVIAWDV VNENLHYSFF ERQFGWDAST AFYAAARLLD SGSALMFMND YNTLEQPGDM AAAPGRYVDR
401: LRQIIASYPE NGAGMAIGLE GHFTTPNIPY MRAALDSLSQ IGLPVWLTEV DVAGGPMQAQ HLEEVLREAY AHPAVQGVIL WSAWRPQGCY VMCLTDNNFK
501: NLPQGDVVDR LLAEWRTAAQ TGTTDEQGYF QAEVAHGDYK VTVSHPSLNT SVSQSVTVDL GSGNHFFIQA
001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV
Arabidopsis Description
At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.