Factsheet for VIT_03s0091g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, vacuole
BaCelLo:	cytosol
MultiLoc:	vacuole
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00900.t01	Wine grape	cytosol	67.93	67.33
VIT_03s0091g00880.t01	Wine grape	vacuole	68.3	63.36
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	63.04	63.16
KRH29254	Soybean	cytosol	55.25	53.89
AT4G33860.1	Thale cress	plasma membrane, vacuole	55.25	52.95
AT4G33840.1	Thale cress	vacuole	53.62	51.39
CDY69164	Canola	vacuole	52.9	50.96
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	52.72	50.79
Bra034585.1-P	Field mustard	vacuole	52.54	50.61
Os03t0201901-00	Rice	cytosol	51.99	50.35
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	52.17	50.17
CDY48434	Canola	vacuole	51.99	50.09
CDY48433	Canola	vacuole	52.36	49.91
Bra034584.1-P	Field mustard	vacuole	51.45	49.56
CDY28323	Canola	vacuole	50.0	49.55
AT4G33830.1	Thale cress	vacuole	51.63	49.48
CDY49378	Canola	plasma membrane, vacuole	51.27	49.48
KRH29253	Soybean	extracellular, vacuole	50.72	49.47
CDY28325	Canola	vacuole	51.81	49.4
TraesCS4B01G259400.1	Wheat	vacuole	51.81	49.06
KXG39936	Sorghum	extracellular, vacuole	51.27	49.05
TraesCS4A01G045800.1	Wheat	vacuole	51.63	48.89
TraesCS4D01G259100.1	Wheat	vacuole	51.63	48.89
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	50.18	48.68
Os03t0201500-01	Rice	vacuole	50.36	48.43
Solyc01g106990.1.1	Tomato	vacuole	50.36	48.18
Zm00001d028103_P001	Maize	extracellular, vacuole	50.36	47.93
EER92683	Sorghum	vacuole	49.64	46.92
HORVU4Hr1G070260.12	Barley	vacuole	51.81	46.81
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.01	46.49
TraesCS4B01G259100.1	Wheat	vacuole	48.01	46.49
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.01	46.17
Zm00001d048151_P001	Maize	vacuole	48.19	45.78
PGSC0003DMT400037865	Potato	cytosol	46.92	45.6
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	47.83	45.13
Solyc05g051260.2.1	Tomato	golgi, vacuole	46.2	44.19
Bra017609.1-P	Field mustard	nucleus	53.26	44.08
HORVU2Hr1G113150.1	Barley	cytosol	42.21	43.47
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	50.36	42.25
Os10t0351700-01	Rice	plasma membrane	44.2	42.0
TraesCS2B01G537100.1	Wheat	vacuole	43.48	41.81
TraesCS2D01G510500.1	Wheat	vacuole	43.12	41.46
Zm00001d030468_P001	Maize	cytosol	44.02	41.26
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	44.75	41.03
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	42.39	40.77
HORVU1Hr1G023120.1	Barley	extracellular	42.39	40.7
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.21	40.59
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	42.93	40.37
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	42.93	40.37
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	41.85	40.24
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	42.57	40.03
HORVU5Hr1G056740.1	Barley	vacuole	42.93	40.03
TraesCSU01G021800.1	Wheat	extracellular, vacuole	42.21	39.83
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	42.03	39.73
TraesCS2A01G584800.1	Wheat	plastid, vacuole	42.03	38.1
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	38.95	37.59
Os10t0351600-00	Rice	cytosol	39.49	37.14
Os03t0201800-01	Rice	extracellular	38.59	36.6
CDX72434	Canola	cytosol, vacuole	52.72	33.18
VIT_03s0038g02180.t01	Wine grape	cytosol	34.96	30.88
GSMUA_Achr1P12520_001	Banana	mitochondrion	45.65	27.51
Solyc01g106980.1.1	Tomato	cytosol	51.63	25.82
GSMUA_Achr1P12510_001	Banana	cytosol	43.66	25.16
VIT_18s0001g08370.t01	Wine grape	mitochondrion	28.44	16.58

Protein Annotations

EntrezGene:100266982	wikigene:100266982	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	ProteinID:CBI22444
ProteinID:CBI22444.3	InterPro:CenC_carb-bd	UniProt:D7SXP4	EMBL:FN595242	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EntrezGene:LOC100266982
wikigene:LOC100266982	PFAM:PF00331	PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF2
SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0001BE1EA2	ArrayExpress:VIT_03s0091g00950	EnsemblPlantsGene:VIT_03s0091g00950
EnsemblPlants:VIT_03s0091g00950.t01	RefSeq:XP_002264837	RefSeq:XP_002264837.2	:	:	:

Description

No Description!

Coordinates

chr3:+:7441440..7444729

Molecular Weight (calculated)

61680.1 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.352

Length

552 amino acids

Sequence
(BLAST)

001: MITQPVWRQC LEKPHKAQYG GGIVLNPELD DGLEGWSAFG EAKIEERVSG GNNFIVAHSR NQPYDSSSQK LHLQKDKLYT FSAWIQVSSG SAPVAAVLKT
101: NAGLKYAGAV VAESGCWSML KGGLTVDASG PAQLYFESKN TSVEIWVDSI SLQPFTQEQW KSHQHQSVEK TRKRNVRLQA IDVKGNPITG ATMALKQNKA
201: NFPIGAVINE FVINNTVYQN WFTKRFTVAT FGNQLKWYSN ERSPGKENYS FPDAMLQFCK KNGINVRGHN ILWDDPVMQP KWVPSLSPTQ LRSAADRRIN
301: SVVNRYRGQF IAWDVVNENL HFTFFEDRLG ANYSAAVFQK THQLDPEPVL FLNDYNTLER IDDASVKPRR YLEKLKEIRS FSGGKLSLGI GLEGHFEAAP
401: NLPYVRAAID TLAEAKVPVW ITELDVSTMP DQARHFGEIL EEAHAHPAVN GIVTFGTWSP RGCYRMCLTD GNFKNLPPGD VLDKLLKQWS HEGLVGVTNA
501: DGFFDSSLFH GDYQVRVTHP TLMTKSSLIH SFKVPSTDTS QEAAVLLVKV SA

Best Arabidopsis Sequence Match ( AT4G33860.1 )
(BLAST)

001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV

Arabidopsis Description

Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.