Factsheet for VIT_18s0001g08370.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
vacuole 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52165	Soybean	cytosol, nucleus	59.56	76.01
KRH61477	Soybean	cytosol	59.45	75.98
KRH15483	Soybean	mitochondrion	73.92	75.27
KRH05535	Soybean	mitochondrion	73.28	74.54
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	30.94	73.25
PGSC0003DMT400012716	Potato	mitochondrion	72.33	70.84
Solyc12g088210.1.1	Tomato	mitochondrion	68.64	70.58
Bra027867.1-P	Field mustard	cytosol	67.37	69.27
PGSC0003DMT400030115	Potato	mitochondrion	67.27	69.16
CDY48844	Canola	cytosol	67.27	69.16
CDY53797	Canola	cytosol	66.95	68.84
AT1G58370.2	Thale cress	cytosol	67.37	67.51
AT4G08160.1	Thale cress	cytosol	52.06	65.56
Solyc04g077190.2.1	Tomato	extracellular	71.49	59.18
CDY29140	Canola	cytosol	51.85	57.56
CDX75175	Canola	cytosol	51.74	51.36
Bra039768.1-P	Field mustard	cytosol	53.01	51.02
HORVU2Hr1G021350.12	Barley	mitochondrion	57.13	49.05
TraesCS2D01G124900.1	Wheat	mitochondrion	56.81	48.91
TraesCS2A01G122200.1	Wheat	mitochondrion	56.39	48.55
EER96324	Sorghum	mitochondrion	55.44	47.81
Zm00001d019586_P008	Maize	mitochondrion	55.44	47.77
TraesCS2B01G144300.3	Wheat	mitochondrion	56.71	47.52
Os07t0456700-01	Rice	plasma membrane	54.38	46.78
GSMUA_Achr1P24570_001	Banana	cytosol	57.76	46.16
VIT_03s0091g00900.t01	Wine grape	cytosol	17.63	29.98
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	16.79	28.86
VIT_03s0091g00880.t01	Wine grape	vacuole	17.95	28.57
VIT_03s0091g00950.t01	Wine grape	cytosol	16.58	28.44
VIT_03s0038g02180.t01	Wine grape	cytosol	18.27	27.68

Protein Annotations

EntrezGene:100253904	wikigene:100253904	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	ProteinID:CCB45709
ProteinID:CCB45709.1	InterPro:CenC_carb-bd	UniProt:F6H158	EMBL:FN595227	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EntrezGene:LOC100253904
wikigene:LOC100253904	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490
PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI00021097D4	ArrayExpress:VIT_18s0001g08370
EnsemblPlantsGene:VIT_18s0001g08370	EnsemblPlants:VIT_18s0001g08370.t01	unigene:Vvi.188	RefSeq:XP_002283550	RefSeq:XP_002283550.1	RefSeq:XP_010664470.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:6851866..6857673

Molecular Weight (calculated)

104819.0 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.274

Length

947 amino acids

Sequence
(BLAST)

001: MRRIWPCCFT RRVSNTHQKA EDIQRSIGTM ENPKEGNADH GVSEKQNEST IKSRDSLSSN IILNHDFSRG LHSWNLNCCN GSVVSAESGF LEGISVKSGG
101: NYAVITNRKE CWQGLEQDIT SRVSLGSTYS VSACVGVSGS LQGSAVVQAT LKLEYQGSAT SYLFIGRTSV SREQWKKLEG TFSLSTMPDR VVFYLEGPSP
201: GLDLLIESVV IFCSSPTEEE SSSTRCAAAG DENIILNPIF EDGVNNWSGR GCKILLHDSM GGGKIVPQSG KFFASATERT QSWNGIQQEI TGRVQRKLAY
301: EVAAVVRIFG NNVTSADVRV TLWVQTPNLR EQYIGVANSQ ATDKDWIQLQ GKFLLNASPS RVVIYLEGPP PGTDILVNSL VVKHAEKIPP SPPPVIEDPA
401: FGINTIQNSN LNDGSNGWFP LGSCTLSVAT GSPRILPPMA RDSLGAHNPL SGHYILVTNR TQTWMGPAQM ITDRVKLYLT YQVSAWVRIG PGATAPQNVN
501: VALGVDSQWV NGGQANVSDD RWYEIGGSFR IEKQPLKVMV YVQGPASGVD LMVAGLQIFP VDRHARFRHL KKETDKIRKR DVILNFSGSG TGTSIGTFVK
601: VRQTQNSFGF GSCVSRTNID NEDFVDFFVK NFNWAVFGNE LKWYWTESQQ GNFNYRDADE LLDLCKSHNM ETRGHCIFWE VEGTVQPWVK SLNKNDLMTA
701: VQNRLTGLLT RYKGKFRHYD VNNEMLHGSF YQDRLGKDIR ANMFKTANQL DSSAALFVND YHVEDGCDTR SSPEKYIEQV IDLQKQGAPV GGIGIQGHID
801: SPVGPIVCSA LDKLGVLGLP IWFTELDVSS INECIRADDL EVMLREAFAH PAVDGIMLWG FWELFMSRNN AHLVNAEGEI NETGWRYLAL RKEWLSHAHG
901: HIDEQGEFMF RGFHGSYVVE IGTGSKKISK TFVVDNGESP LVVSIGL

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.