CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
vacuole 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15483	Soybean	mitochondrion	94.2	94.3
KRH52165	Soybean	cytosol, nucleus	65.09	81.67
KRH61477	Soybean	cytosol	64.77	81.38
VIT_18s0001g08370.t01	Wine grape	mitochondrion	74.54	73.28
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	30.72	71.5
Solyc12g088210.1.1	Tomato	mitochondrion	68.42	69.16
PGSC0003DMT400030115	Potato	mitochondrion	67.78	68.51
PGSC0003DMT400012716	Potato	mitochondrion	70.68	68.05
Bra027867.1-P	Field mustard	cytosol	66.17	66.88
CDY48844	Canola	cytosol	66.06	66.78
AT1G58370.2	Thale cress	cytosol	67.56	66.56
CDY53797	Canola	cytosol	65.74	66.45
AT4G08160.1	Thale cress	cytosol	52.42	64.89
Solyc04g077190.2.1	Tomato	extracellular	70.25	57.17
CDY29140	Canola	cytosol	51.77	56.51
CDX75175	Canola	cytosol	51.99	50.73
Bra039768.1-P	Field mustard	cytosol	52.52	49.7
HORVU2Hr1G021350.12	Barley	mitochondrion	55.1	46.51
TraesCS2A01G122200.1	Wheat	mitochondrion	54.89	46.45
TraesCS2D01G124900.1	Wheat	mitochondrion	54.78	46.36
EER96324	Sorghum	mitochondrion	54.35	46.08
Zm00001d019586_P008	Maize	mitochondrion	53.71	45.5
Os07t0456700-01	Rice	plasma membrane	53.49	45.23
TraesCS2B01G144300.3	Wheat	mitochondrion	54.89	45.22
GSMUA_Achr1P24570_001	Banana	cytosol	55.42	43.54
KRH51408	Soybean	extracellular	19.23	32.49
KRH60710	Soybean	extracellular	19.33	32.32
KRG91114	Soybean	nucleus	2.9	32.14
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	17.83	28.62
KRG91115	Soybean	cytoskeleton, cytosol, plastid	5.48	28.49
KRH35662	Soybean	cytosol, nucleus, vacuole	12.57	28.26
KRH35663	Soybean	plasma membrane, vacuole	17.19	27.54
KRH29254	Soybean	cytosol	16.54	27.21
KRH29253	Soybean	extracellular, vacuole	15.04	24.73

Protein Annotations

EntrezGene:100818319	Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EMBL:ACUP02010746	InterPro:CenC_carb-bd
ncoils:Coil	InterPro:GH10	EnsemblPlantsGene:GLYMA_17G232200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K7MNJ0	ProteinID:KRH05533.1	ProteinID:KRH05534.1
EnsemblPlants:KRH05535	ProteinID:KRH05535	ProteinID:KRH05535.1	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	MetaCyc:PWY-6784	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	UniParc:UPI00029527DB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:38705949..38712613

Molecular Weight (calculated)

103386.0 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.294

Length

931 amino acids

Sequence
(BLAST)

001: MKRFSACCFT SRISKFHSHW KHNHSQSQIM AGNISGPSGS KGANILLNHD FSSGLTSWHL NSCTGYVISS KSGTQGGIPM DLDANYAVIT DRKECWQGLE
101: QDITNKISIG STYTVSACVG VSGVSQGSSD VLATLKLEHH DSATRYLFIG RTSVNNDSWE KLEGTFSLST MPDRVIIYLE GPAPGVDLLI RSVVINCSTP
201: NDNTTSTGCV SAGDDNIIVN PQFDDGLKNW SGRSCKIMLH DSMNDGKIVP KSGKFFASAT ERTQSWNGIQ QEITGRVQRK LAYEVTALVR IFGNNVSTAD
301: VRATLWVQTP DLREQYIGIA NVQATDKDWI TMQGKFLLNG SPSKVVLYLE GPPPGTDILL NNLVLKHAAK TPPSTPPDVK NVAFGVNIIE NSNLADSTNG
401: WFPLGNCTLS VKTGSPHIIP PMARDSLGPH ELLSGRYILV TNRMQTWMGP AQTITDKVKL FVTYQVSAWV RIGSAGSSGP QNVNVALGVD NQWVNGGQTQ
501: VSDDMWHEIG GSFRIEKQPS KVMVYVQGPA SGVDLMVAGL QIFPVDRHTR FRYLKIQTDK IRKRDVILKF SGLDSGSYAN TSVKVIQTHN DFPIGTCISR
601: TNIDNEDFVN FIVKHFNWAV FGNELKWYWT EPQQGNFNYK DADDMLSLCQ KHKIQTRGHC IFWEVDETVQ QWIKSLNKND LMTAVQNRLN GLLTRYKGKF
701: SHYDVNNEML HGSFYQDRLG KDIRANMFKT ASQLDPSATL FVNDYHVEDG CDTRSCPDKY IHHILDLQEQ GAPVGGIGIQ GHIDCPIGPI VSSSLDKLGI
801: LGLPIWFTEL DVSSVNEYVR ADDLEVMLRE AMAHPTVEGL MLWGFWELFM SRDHSHLVNA EGDINEAGKR FLALKQEWLS HSRGHVDEQG QYNFRGFHGT
901: YNVQVVTPSK KISKTFVLDK GDSPLVVSID L

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.