Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29140 | Canola | cytosol | 86.44 | 76.2 |
| CDX75175 | Canola | cytosol | 87.23 | 68.76 |
| KRH61477 | Soybean | cytosol | 65.96 | 66.94 |
| KRH52165 | Soybean | cytosol, nucleus | 65.82 | 66.71 |
| PGSC0003DMT400012713 | Potato | cytosol, extracellular, nucleus | 35.24 | 66.25 |
| Bra039768.1-P | Field mustard | cytosol | 83.24 | 63.62 |
| AT1G58370.2 | Thale cress | cytosol | 67.42 | 53.65 |
| KRH15483 | Soybean | mitochondrion | 64.89 | 52.47 |
| KRH05535 | Soybean | mitochondrion | 64.89 | 52.42 |
| VIT_18s0001g08370.t01 | Wine grape | mitochondrion | 65.56 | 52.06 |
| Solyc12g088210.1.1 | Tomato | mitochondrion | 63.3 | 51.68 |
| PGSC0003DMT400030115 | Potato | mitochondrion | 62.77 | 51.25 |
| PGSC0003DMT400012716 | Potato | mitochondrion | 63.3 | 49.22 |
| Solyc04g077190.2.1 | Tomato | extracellular | 63.43 | 41.7 |
| AT1G10050.3 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 58.38 | 40.09 |
| AT4G38300.1 | Thale cress | mitochondrion | 14.63 | 39.71 |
| HORVU2Hr1G021350.12 | Barley | mitochondrion | 52.79 | 35.99 |
| TraesCS2A01G122200.1 | Wheat | mitochondrion | 52.26 | 35.73 |
| TraesCS2D01G124900.1 | Wheat | mitochondrion | 52.26 | 35.73 |
| EER96324 | Sorghum | mitochondrion | 51.33 | 35.15 |
| Zm00001d019586_P008 | Maize | mitochondrion | 51.33 | 35.12 |
| Os07t0456700-01 | Rice | plasma membrane | 51.2 | 34.97 |
| TraesCS2B01G144300.3 | Wheat | mitochondrion | 52.26 | 34.78 |
| GSMUA_Achr1P24570_001 | Banana | cytosol | 51.73 | 32.83 |
| AT4G38650.1 | Thale cress | vacuole | 22.07 | 29.54 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 19.41 | 25.35 |
| AT4G33830.1 | Thale cress | vacuole | 19.41 | 25.35 |
| AT4G33840.1 | Thale cress | vacuole | 19.28 | 25.17 |
| AT4G33820.1 | Thale cress | extracellular, vacuole | 18.35 | 24.21 |
| AT4G33810.3 | Thale cress | extracellular, vacuole | 17.82 | 23.55 |
| AT2G14690.1 | Thale cress | vacuole | 17.55 | 23.16 |
Protein Annotations
| Gene3D:2.60.120.260 | MapMan:21.2.2.2.4 | Gene3D:3.20.20.80 | EntrezGene:826365 | ProteinID:AEE82599.1 | ArrayExpress:AT4G08160 |
| EnsemblPlantsGene:AT4G08160 | RefSeq:AT4G08160 | TAIR:AT4G08160 | RefSeq:AT4G08160-TAIR-G | EnsemblPlants:AT4G08160.1 | TAIR:AT4G08160.1 |
| Unigene:At.33772 | InterPro:CenC_carb-bd | UniProt:F4JG10 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0031176 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | RefSeq:NP_192556.2 |
| PFAM:PF00331 | PFAM:PF02018 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF15 | SMART:SM00633 | SUPFAM:SSF49785 |
| SUPFAM:SSF51445 | UniParc:UPI000034F122 | SEG:seg | : | : | : |
Description
Glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG10]
Coordinates
chr4:-:5159033..5162867
Molecular Weight (calculated)
84556.6 Da
IEP (calculated)
5.779
GRAVY (calculated)
-0.310
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL
101: IFGNNVTSAT VQATLWVLNA NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR NRPSPPPFYE NPGFGVNIVE
201: NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA
301: LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI
401: VKVKQTYNSF PVGTCINRTD IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF WEVESTVQPW VRQLNKTDLM
501: NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH
601: IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGIML WGFWELSMSR ENANLVEGEG EVNEAGKRFL EVKQEWLSHA
701: YGIINDESEF TFRGYHGTYA VEICTPAGIV LKTFVVEKGD TPLVISIDLS SL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.