Factsheet for AT1G10050.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031698.1-P	Field mustard	cytosol	82.56	85.53
CDY22606	Canola	endoplasmic reticulum, vacuole	83.01	62.43
CDY53833	Canola	endoplasmic reticulum, extracellular	82.83	62.38
AT1G58370.2	Thale cress	cytosol	51.32	59.47
AT4G08160.1	Thale cress	cytosol	40.09	58.38
TraesCS2A01G122200.1	Wheat	mitochondrion	49.22	49.0
TraesCS2D01G124900.1	Wheat	mitochondrion	48.86	48.64
Os07t0456700-01	Rice	plasma membrane	48.86	48.59
EER96324	Sorghum	mitochondrion	48.58	48.45
Zm00001d019586_P008	Maize	mitochondrion	48.49	48.32
HORVU2Hr1G021350.12	Barley	mitochondrion	48.58	48.23
TraesCS2B01G144300.3	Wheat	mitochondrion	48.58	47.08
GSMUA_Achr1P24570_001	Banana	cytosol	48.4	44.73
AT4G38300.1	Thale cress	mitochondrion	9.95	39.35
AT4G38650.1	Thale cress	vacuole	15.25	29.72
AT4G33840.1	Thale cress	vacuole	13.97	26.56
AT4G33860.1	Thale cress	plasma membrane, vacuole	13.79	26.22
AT4G33830.1	Thale cress	vacuole	13.7	26.04
AT4G33810.3	Thale cress	extracellular, vacuole	12.6	24.25
AT4G33820.1	Thale cress	extracellular, vacuole	12.42	23.86
AT2G14690.1	Thale cress	vacuole	12.33	23.68

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EntrezGene:837540	UniProt:A0A1P8AUA7	ProteinID:AAC34334.1
ProteinID:AEE28533.1	ProteinID:ANM60238.1	ProteinID:ANM60239.1	ArrayExpress:AT1G10050	EnsemblPlantsGene:AT1G10050	RefSeq:AT1G10050
TAIR:AT1G10050	RefSeq:AT1G10050-TAIR-G	EnsemblPlants:AT1G10050.3	Unigene:At.42196	InterPro:CenC_carb-bd	InterPro:GH10
InterPro:GH10_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0031176	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001000	InterPro:IPR008979	RefSeq:NP_001322538.1	RefSeq:NP_001322539.1	RefSeq:NP_172476.1	PFAM:PF00331
PFAM:PF02018	ScanProsite:PS00591	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI000848B0D7	SEG:seg	:

Description

glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G10050]

Coordinates

chr1:+:3279006..3283580

Molecular Weight (calculated)

121954.0 Da

IEP (calculated)

4.931

GRAVY (calculated)

-0.273

Length

1095 amino acids

Sequence
(BLAST)

0001: MSVGFLFLQL ITFLCPLASL FSSFPFKVQA KLMADLNIVM NGDFFAGIEP WYPNGCEAFV VSSDPFSSEV MSADSSSGGY VVVTNRKETW QGLEQDITTR
0101: VASGMNYTVS TCVGVSGPFN ESAEVLSTVR LEHEDSPTEY LCIGKTYASR DKWVDLEGTF SISNMPDRVV LYLEGPAPGK DLLIRSVTVR SSTSSDFQET
0201: EKNTDASNVF PLALNIIKNH DFSDGLYSWN TNGCDSFVVS SNDCNLESNA VVNNRSETWQ GLEQDITDNV SPGFSYKVSA SVSVSGPVLG SAQVLATLKL
0301: EHKSSATEFQ LIGKTYASKD IWKTLEGTFE VSGRPDRVVF FLEGPPPGID LLVKSVTIHC ESDNQFERSR EFCSAPESDN HIFLNSSFSD GLNHWSGRGC
0401: NLMLHESLAD GKILPDSGTC FASASERTHK WSGIEQDITE RVQRKLIYEA SSVVRLSHSH HTVQATLYVQ YLDQREEYIG ISSVQGTHDD WVELKGKFLL
0501: NGSPARAVVY IEGPPPGIDV FVDHFAVKPA EKETPSGRPY IESHAFGMNI VSNSHLSDGT IEGWFPLGDC HLKVGDGSPR ILPPLARDSL RKTQGYLSGR
0601: YVLATNRSGT WMGPAQTITD KVKLFVTYQV SAWVKIGSGG RTSPQDVNIA LSVDGNWVNG GKVEVDDGDW HEVVGSFRIE KEAKEVMLHV QGPSPGVDLM
0701: VAGLQIFAVD RKARLSYLRG QADVVRKRNV CLKFSGLDPS ELSGATVKIR QTRNSFPLGS CISRSNIDNE DFVDFFLNNF DWAVFGYELK WYWTEPEQGN
0801: FNYRDANEMI EFCERYNIKT RGHCIFWEVE SAIQPWVQQL TGSKLEAAVE NRVTDLLTRY NGKFRHYDVN NEMLHGSFYR DRLDSDARAN MFKTAHELDP
0901: LATLFLNEYH IEDGFDSRSS PEKYIKLVHK LQKKGAPVGG IGIQGHITSP VGHIVRSALD KLSTLGLPIW FTELDVSSTN EHIRGDDLEV MLWEAFAHPA
1001: VEGVMLWGFW ELFMSREHSH LVNADGEVNE AGKRFLEIKR EWLSFVDGEI EDGGGLEFRG YHGSYTVEVV TSESKYVTNF VVDKGNSPVD VIIDL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.