Factsheet for Bra027867.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48844	Canola	cytosol	99.13	99.13
AT1G58370.2	Thale cress	cytosol	89.9	87.62
KRH52165	Soybean	cytosol, nucleus	57.98	71.97
KRH61477	Soybean	cytosol	57.55	71.53
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	30.08	69.25
VIT_18s0001g08370.t01	Wine grape	mitochondrion	69.27	67.37
KRH05535	Soybean	mitochondrion	66.88	66.17
KRH15483	Soybean	mitochondrion	66.45	65.81
Solyc12g088210.1.1	Tomato	mitochondrion	63.95	63.95
PGSC0003DMT400012716	Potato	mitochondrion	66.88	63.7
PGSC0003DMT400030115	Potato	mitochondrion	63.52	63.52
Solyc04g077190.2.1	Tomato	extracellular	66.23	53.32
Bra031698.1-P	Field mustard	cytosol	59.5	51.84
Bra039768.1-P	Field mustard	cytosol	54.18	50.71
HORVU2Hr1G021350.12	Barley	mitochondrion	52.99	44.24
TraesCS2D01G124900.1	Wheat	mitochondrion	52.44	43.91
TraesCS2A01G122200.1	Wheat	mitochondrion	52.44	43.91
EER96324	Sorghum	mitochondrion	52.01	43.62
Os07t0456700-01	Rice	plasma membrane	52.12	43.6
Zm00001d019586_P008	Maize	mitochondrion	51.57	43.22
TraesCS2B01G144300.3	Wheat	mitochondrion	52.66	42.92
GSMUA_Achr1P24570_001	Banana	cytosol	54.18	42.11
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	18.13	29.61
Bra034584.1-P	Field mustard	vacuole	16.5	26.53
Bra034585.1-P	Field mustard	vacuole	16.4	26.35
Bra036392.1-P	Field mustard	cytosol	14.55	25.57
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	15.85	25.44
Bra017610.1-P	Field mustard	extracellular, vacuole	12.49	25.11
Bra017609.1-P	Field mustard	nucleus	15.96	22.04

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EnsemblPlantsGene:Bra027867	EnsemblPlants:Bra027867.1	EnsemblPlants:Bra027867.1-P
InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001000	InterPro:IPR008979	UniProt:M4EGF3	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI0002542822	:	:	:	:	:

Description

AT1G58370 (E=0.0) RXF12, ATXYN1 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds

Coordinates

chrA09:-:9375962..9379482

Molecular Weight (calculated)

102607.0 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.343

Length

921 amino acids

Sequence
(BLAST)

001: MEISRNDNGE HAKQNNNNNV TPVIGSDRTN VIVNHDFSLG THSWHPNCCE ASIVTADSGI PHGVLDPSKY GSYVVVNNRK ETWQGLEQDI TSRVKPCSLY
101: KVTATVAVSG PVQGLEEVMA TLKLENQQSP TNYQFIAKTC VFKEKWVRLE GMFSLPSLPE RVVFYLEGPS PGIDLLIQSV TIHLESDPEL ERREAVTVED
201: ENLVVNPNFE DGLNNWSGRS CKIVCHDSMA DGKIVPQSGK AFAAATERTQ SWNGIQQEIT GKVERKRVYE ATAVVRIYGN NVTSATVQAT LWVQNPNQRD
301: QYIGIANVQA TDKEWIQCKG KFLLNGSASR VVIYIEGPPP GTDILLNSLT VKHAEKIPPS PRPAIENPAF GVNILTNSQL TDGTTNGWFP LGNCTLSVAE
401: GSPRILPPMA RDSLGPHEPL SGRYMLVTNR TQTWMGPAQM ITDKLKLFLT YQISVWVKLG SGINSPQNVN VALGIDSQWV NGGQVEINDD KWHEIGGSFR
501: VEKQPSKTLV YIQGPSSGVD LMVAGLQIFP VDRLARIKHL RRQSDKIRRS DVILKFSGAD ASKLSGATVK VRQTRNSFPV GTCISRSSID NEDFVEFFLK
601: NFNWAVFGNE LKWYWTEPEQ GKLNYQDADD MLNLCSSNNI ETRGHCIFWE VQATVQQWIQ NMNQNDLNTA VQNRLTGLLN RYKGKFKHYD VNNEMLHGSF
701: YQDKLGKDIR VNMFKTAHQL DPSARLFVND YHIEDGCDPK SCPEKYIEHI LDLQEKGAPV GGIGIQGHID SPVGPIVCSA LDRLGILGLP IWFTELDVSS
801: INEHIRGDDL EVMMWEAFGH PAVEGIMLWG FWELFMSRDN SHLVNAEGDV NEAGKRLLAV KKDWLSHANG HIDQNGAFAF RGYHGNYAVE VITSSSQKVL
901: KTFVVEKGDS AQVITVDLQG L

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.