Factsheet for Bra036392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49598	Canola	cytosol	36.07	100.0
CDY49599	Canola	extracellular, vacuole	55.34	81.92
AT2G14690.1	Thale cress	vacuole	76.53	70.35
Bra017610.1-P	Field mustard	extracellular, vacuole	51.34	58.73
KRG91114	Soybean	nucleus	8.78	54.76
KRG91115	Soybean	cytoskeleton, cytosol, plastid	14.31	41.9
KRH35663	Soybean	plasma membrane, vacuole	45.04	40.62
KRG91113	Soybean	endoplasmic reticulum, plasma membrane, vacuole	44.66	40.34
KRH35662	Soybean	cytosol, nucleus, vacuole	28.82	36.47
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	37.98	34.67
Bra034585.1-P	Field mustard	vacuole	37.4	34.21
Bra034584.1-P	Field mustard	vacuole	36.83	33.68
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	33.21	30.85
Bra017609.1-P	Field mustard	nucleus	37.02	29.09
Bra027867.1-P	Field mustard	cytosol	25.57	14.55
Bra039768.1-P	Field mustard	cytosol	26.14	13.92
Bra031698.1-P	Field mustard	cytosol	24.62	12.2

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	EnsemblPlantsGene:Bra036392	EnsemblPlants:Bra036392.1	EnsemblPlants:Bra036392.1-P
InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979
UniProt:M4F5N6	PFAM:PF00331	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF18	SMART:SM00633
SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000254120C	:	:	:

Description

AT2G14690 (E=1e-238) | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds

Coordinates

chrA07:-:2071999..2074401

Molecular Weight (calculated)

59848.5 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.395

Length

524 amino acids

Sequence
(BLAST)

001: MELPQTINTG EGFQELKIIE NGKVVERVNL QKGGIYSISA WVKLRNEKER AVRITLRGKN VRYVDGGQVI AKKGCWSLLK GGFIVNVSAP VDIFFKSDDS
101: AAAEINIQNV RLQRFNKTQW RLQQDQVIEK IRKSKVRFQV SFQNKSTVEG SLISIKQIRP SFLLGCAMNY RILESDSYRE WFVSRFRLTS FTNEMKWYTT
201: EEVRGQENYT LADAMMQLAE ENKVLVKGHT VLWDDKKWQP IWVKSITDSD DLKNVTLNRM NSVMKRYKGR LIGWDVINEN LHYSYYEDML GKNASAMIYS
301: LASKIDPDIP LFINEYNTVE YAKEGVGSPI NVKNKMEEIV SYPGNMNIKG GIGAQAHFVP AQPNLPYMRS ALDTLGSLGF PVWLTEVDMP KCPDQVKYME
401: EVLREAYSHP AVQGIILYAG PEMSGFNKLT LADNDFNNTE AGDLIDKLLQ EWQQEPAEIP VEYHEHNDEE QSRIIGFSPE VSLLHGHYTV TVTNPSMKNF
501: STTFSLEVTT ETGQLQVVQL ELDV

Best Arabidopsis Sequence Match ( AT2G14690.1 )
(BLAST)

001: MKRFNYGFFH LVLFLISLLL LGSGICMDPF SYDQSLKSEC LMEPPQTTAN TGGEGVKELK INENGGIRNV VEGVDLREGN IYITSAWVKL RNESQRKVGM
101: TFSEKNGRNV FGGEVMAKRG CWSLLKGGIT ADFSGPIDIF FESDGLAGLE ISVQNVRMQR FHKTQWRLQQ DQVIEKIRKN KVRFQMSFKN KSALEGSVIS
201: IEQIKPSFLL GCAMNYRILE SDSYREWFVS RFRLTSFTNE MKWYATEAVR GQENYKIADS MMQLAEENAI LVKGHTVLWD DKYWQPNWVK TITDPEDLKN
301: VTLNRMNSVM KRYKGRLIGW DVMNENVHFN YFENMLGGNA SAIVYSLASK LDPDIPLFLN EFNTVEYDKD RVVSPVNVVK KMQEIVSFPG NNNIKGGIGA
401: QGHFAPVQPN LAYMRYALDT LGSLSFPVWL TEVDMFKCPD QVKYMEDILR EAYSHPAVKA IILYGGPEVS GFDKLTLADK DFKNTQAGDL IDKLLQEWKQ
501: EPVEIPIQHH EHNDEEGGRI IGFSPEISLL HGHYRVTVTN PSMKNLSTRF SVEVTKESGH LQEVQLVIDA

Arabidopsis Description

1,4-beta-xylan endohydrolase [Source:UniProtKB/TrEMBL;Acc:Q680B7]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.