Factsheet for Bra017609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
vacuole 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	Bra024839.1-P	AT2G01950.1	19000166
AT4G33840.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49378	Canola	plasma membrane, vacuole	80.96	94.41
Bra034584.1-P	Field mustard	vacuole	67.32	78.36
Bra034585.1-P	Field mustard	vacuole	66.12	76.96
AT4G33840.1	Thale cress	vacuole	65.82	76.22
AT4G33830.1	Thale cress	vacuole	65.67	76.04
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	62.22	72.3
KRH29254	Soybean	cytosol	47.23	55.65
VIT_03s0091g00900.t01	Wine grape	cytosol	46.03	55.12
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	44.98	54.45
VIT_03s0091g00880.t01	Wine grape	vacuole	47.98	53.78
VIT_03s0091g00950.t01	Wine grape	cytosol	44.08	53.26
KRH29253	Soybean	extracellular, vacuole	43.18	50.88
Zm00001d028103_P001	Maize	extracellular, vacuole	43.03	49.48
Os03t0201901-00	Rice	cytosol	42.13	49.3
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	41.98	49.21
EER92683	Sorghum	vacuole	42.88	48.97
TraesCS4D01G259100.1	Wheat	vacuole	42.58	48.71
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.53	48.6
TraesCS4B01G259100.1	Wheat	vacuole	41.23	48.25
TraesCS4B01G259400.1	Wheat	vacuole	42.13	48.2
KXG39936	Sorghum	extracellular, vacuole	41.68	48.18
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	41.38	48.08
TraesCS4A01G045800.1	Wheat	vacuole	41.68	47.68
Os03t0201500-01	Rice	vacuole	40.63	47.21
Zm00001d048151_P001	Maize	vacuole	41.08	47.16
Solyc01g106990.1.1	Tomato	vacuole	39.88	46.1
HORVU4Hr1G070260.12	Barley	vacuole	41.68	45.5
HORVU2Hr1G113150.1	Barley	cytosol	36.43	45.34
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.23	44.43
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	38.98	44.29
Os10t0351700-01	Rice	plasma membrane	38.53	44.23
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	38.83	44.12
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	38.83	44.12
HORVU5Hr1G056740.1	Barley	vacuole	39.13	44.09
HORVU1Hr1G023120.1	Barley	extracellular	37.93	44.0
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	37.78	43.9
Zm00001d030468_P001	Maize	cytosol	38.68	43.8
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	37.63	43.73
PGSC0003DMT400037865	Potato	cytosol	36.88	43.31
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	38.98	43.19
TraesCSU01G021800.1	Wheat	extracellular, vacuole	37.78	43.08
Solyc05g051260.2.1	Tomato	golgi, vacuole	37.03	42.81
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	37.33	42.56
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	37.18	42.47
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	41.53	42.1
TraesCS2B01G537100.1	Wheat	vacuole	36.13	41.99
TraesCS2D01G510500.1	Wheat	vacuole	35.98	41.81
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	35.53	41.43
TraesCS2A01G584800.1	Wheat	plastid, vacuole	37.48	41.05
Os10t0351600-00	Rice	cytosol	34.03	38.67
Bra017610.1-P	Field mustard	extracellular, vacuole	25.94	37.77
Bra036392.1-P	Field mustard	cytosol	29.09	37.02
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	30.73	36.35
Os03t0201800-01	Rice	extracellular	31.03	35.57
GSMUA_Achr1P12520_001	Banana	mitochondrion	39.58	28.82
GSMUA_Achr1P12510_001	Banana	cytosol	37.63	26.2
Solyc01g106980.1.1	Tomato	cytosol	39.88	24.09
Bra027867.1-P	Field mustard	cytosol	22.04	15.96
Bra039768.1-P	Field mustard	cytosol	21.44	14.53
Bra031698.1-P	Field mustard	cytosol	22.19	14.0

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	EnsemblPlantsGene:Bra017609	EnsemblPlants:Bra017609.1	EnsemblPlants:Bra017609.1-P
InterPro:CenC_carb-bd	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001000	InterPro:IPR008979	UniProt:M4DM77	PFAM:PF00331	PFAM:PF02018	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF2	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0002541176
SEG:seg	:	:	:	:	:

Description

AT4G33860 (E=2e-262) | glycosyl hydrolase family 10 protein

Coordinates

chrA03:+:29266973..29270224

Molecular Weight (calculated)

74146.6 Da

IEP (calculated)

9.185

GRAVY (calculated)

-0.410

Length

667 amino acids

Sequence
(BLAST)

001: MIWVLSHRQR KETGRGVEAA KKSNDGGYIR RIWWFRRSDE RKREANGRNL HGGGSGGGLN SGQRGAVTII ITRKGGAASR GGELGEGGGA EEIHPSGVHQ
101: DSGLGASSTA ASLLQPFSIK LFSILSLCLE NPYKPQYNGG IIVNPDLQNG SQGWAQFANA KVDFREFGGN KFVVARGRNQ SYDSVSQKIS LEKGLLYTFS
201: AWLQVSKGKA PVIAVFKKNG EYKHAGSVIA ESKCWSMLKG GLTIDESGPA ELYFESEDTT VEIWVDSISL QPFTQEEWNA HHEQTIHRTR KRGMRIRAVN
301: SLGEPIPNAT ISIVQNRLGF SFGCEVEKYI LVNQAYQNWF TKRFTVTTFA NEMKWYSTEA VRGKEDYTTA DAMLRFFKQH GIAVRGHNIV WNDPKYQLSW
401: VSSLSGNDLY NAVKRRVSSV VSRYKGQLLS WDVVNENLHF SFFESKMGPQ ASYNIFALAH SIDPRTTMFM NEFDTLEQPG DSASSPARYL GKLRELQSIR
501: VAGNIQLGIG LESHFNIPNI PYMRSALDTL AATGLPIWLT EVDVQAPPNV QAKYFEQVLR EGHAHPQVKG MVTWSGYSPS GCYKMCLTDG NFRNLPTGDV
601: VDKLLREWGG LRGQTTGLTD ADGFFEASLL HGDYDISIAH PLTNSTASHR FKLTSDDSQP SRFVVHV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.