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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33840.1 PGSC0003DMT400075691 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g051260.2.1 Tomato golgi, vacuole 92.08 90.64
VIT_03s0091g00890.t01 Wine grape extracellular, vacuole 46.48 47.91
VIT_03s0091g00880.t01 Wine grape vacuole 49.65 47.4
VIT_03s0091g00950.t01 Wine grape cytosol 45.6 46.92
VIT_03s0091g00900.t01 Wine grape cytosol 45.42 46.32
KRH29254 Soybean cytosol 44.37 44.52
CDY28324 Canola endoplasmic reticulum, extracellular, vacuole 44.19 43.8
GSMUA_Achr1P12500_001 Banana extracellular, vacuole 43.84 43.76
CDY69164 Canola vacuole 43.84 43.46
Bra034585.1-P Field mustard vacuole 43.66 43.28
AT4G33860.1 Thale cress plasma membrane, vacuole 43.84 43.23
Os03t0201901-00 Rice cytosol 43.31 43.16
AT4G33830.1 Thale cress vacuole 43.66 43.06
KXG39936 Sorghum extracellular, vacuole 43.49 42.81
CDY28323 Canola vacuole 41.9 42.73
Bra034586.1-P Field mustard endoplasmic reticulum, vacuole 43.13 42.68
CDY48433 Canola vacuole 43.31 42.49
TraesCS4D01G259500.1 Wheat endoplasmic reticulum, extracellular, vacuole 42.61 42.46
CDY48434 Canola vacuole 42.78 42.41
Bra034584.1-P Field mustard vacuole 42.78 42.41
HORVU2Hr1G113150.1 Barley cytosol 39.79 42.16
CDY28325 Canola vacuole 42.96 42.14
TraesCS4B01G259100.1 Wheat vacuole 42.25 42.11
TraesCS4A01G045500.1 Wheat endoplasmic reticulum, extracellular, vacuole 42.43 41.99
Os03t0201500-01 Rice vacuole 42.08 41.64
Zm00001d028103_P001 Maize extracellular, vacuole 42.43 41.55
EER92683 Sorghum vacuole 42.61 41.44
KRH29253 Soybean extracellular, vacuole 41.2 41.34
AT4G33840.1 Thale cress vacuole 41.55 40.97
CDY49378 Canola plasma membrane, vacuole 41.2 40.91
TraesCS4D01G259100.1 Wheat vacuole 41.9 40.82
Zm00001d048151_P001 Maize vacuole 41.55 40.62
TraesCS4B01G259400.1 Wheat vacuole 41.37 40.31
TraesCS4A01G045800.1 Wheat vacuole 40.85 39.79
Os10t0351700-01 Rice plasma membrane 40.67 39.76
TraesCS2B01G537100.1 Wheat vacuole 40.14 39.72
TraesCS1D01G107700.1 Wheat extracellular, vacuole 40.14 39.72
TraesCS1B01G124500.1 Wheat endoplasmic reticulum, extracellular, vacuole 40.14 39.72
HORVU1Hr1G023120.1 Barley extracellular 40.14 39.65
TraesCSU01G021800.1 Wheat extracellular, vacuole 40.49 39.32
TraesCS2D01G510500.1 Wheat vacuole 39.44 39.02
TraesCS1A01G107100.1 Wheat extracellular, vacuole 39.44 39.02
TraesCS5A01G196500.1 Wheat plasma membrane, vacuole 40.14 38.84
TraesCS5A01G196600.1 Wheat plasma membrane, vacuole 40.14 38.84
TraesCS5D01G194800.1 Wheat plasma membrane, vacuole 40.14 38.84
HORVU5Hr1G056740.1 Barley vacuole 40.32 38.68
Zm00001d030468_P001 Maize cytosol 39.96 38.54
HORVU4Hr1G070260.12 Barley vacuole 41.37 38.46
HORVU2Hr1G122890.1 Barley endoplasmic reticulum, plasma membrane, vacuole 39.44 38.36
KXG34533 Sorghum endoplasmic reticulum, plasma membrane, vacuole 40.14 37.87
Zm00001d048152_P001 Maize cytosol, extracellular, vacuole 43.49 37.54
TraesCS2A01G584800.1 Wheat plastid, vacuole 39.61 36.95
PGSC0003DMT400021703 Potato mitochondrion 24.65 36.94
Bra017609.1-P Field mustard nucleus 43.31 36.88
PGSC0003DMT400059688 Potato cytosol, mitochondrion 27.82 36.41
PGSC0003DMT400031416 Potato cytosol, mitochondrion 21.48 36.2
PGSC0003DMT400032748 Potato endoplasmic reticulum, golgi, vacuole 37.85 36.01
PGSC0003DMT400024766 Potato cytosol 32.04 35.62
PGSC0003DMT400015813 Potato cytosol 31.34 35.18
EER92684 Sorghum endoplasmic reticulum, extracellular, vacuole 34.51 34.27
Os03t0201800-01 Rice extracellular 34.33 33.51
Os10t0351600-00 Rice cytosol 33.98 32.88
PGSC0003DMT400012713 Potato cytosol, extracellular, nucleus 20.42 29.0
PGSC0003DMT400085040 Potato cytosol 10.56 28.99
CDX72434 Canola cytosol, vacuole 42.78 27.71
GSMUA_Achr1P12520_001 Banana mitochondrion 39.61 24.56
GSMUA_Achr1P12510_001 Banana cytosol 37.5 22.23
PGSC0003DMT400030115 Potato mitochondrion 26.58 16.4
PGSC0003DMT400012716 Potato mitochondrion 26.76 15.72
Protein Annotations
Gene3D:2.60.120.260Gene3D:3.20.20.80MapMan:35.1InterPro:CenC_carb-bdInterPro:GH10GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787
GO:GO:0016798InterPro:Galactose-bd-like_sfInterPro:Glycoside_hydrolase_SFInterPro:IPR001000InterPro:IPR008979UniProt:M1B613
PFAM:PF00331PFAM:PF02018EnsemblPlantsGene:PGSC0003DMG400014606PGSC:PGSC0003DMG400014606EnsemblPlants:PGSC0003DMT400037865PFscan:PS51760
PANTHER:PTHR31490PANTHER:PTHR31490:SF2SMART:SM00633SUPFAM:SSF49785SUPFAM:SSF51445UniParc:UPI000295DB09
Description
Endo-1,4-beta-xylanase C [Source:PGSC_GENE;Acc:PGSC0003DMG400014606]
Coordinates
chr5:+:45913654..45918179
Molecular Weight (calculated)
64841.7 Da
IEP (calculated)
6.595
GRAVY (calculated)
-0.428
Length
568 amino acids
Sequence
(BLAST)
001: MNIFHENSVY VTNIRFPVYA IDYDYHFTTK CLEEPLNPQY SGGIAKNPEI NDGLNGWTSF GSSKIETRTS KQGNTFIVAS HRTQPNHSFS QTIHVEKDTM
101: YTISAWLQVS RGKADVVAMI RTPNGDIPTG WVIAKSGCWS MLKGGFNGNF SGPAELYFES KDISSVELWA DSISIQPFTL LEWKAHQDQS TEKTRKSKVK
201: LQVVDHQGQP ISNATIMIKQ TSSSFPIGNA MSSHILINTG YQDWYNPRFK LTVFENEMKW WETEPLPNKD DYHLADAMLQ YVQNRTILLR GHNIVWENRD
301: MLPQWAKDLP RPLFATAIER RFNSLVPRYR GKVIHWDVDN ENMHFSYLES QTGENTVYYY KKAYDMDKGA LLFLNEWGTI ENPNDIVASP AKYLAKIEEF
401: RTLGYNGTLG IGLQGHFDTP TIPYIRSALD ILATANLPIW ITELDVSSRP LQADYLRDIL GELYTHPGVQ GIMFWSPWQP QGCFKMCLTD NDFNNLPTGD
501: VVDDFMRRIN HQGLISSTNH DGYIETSLYH GDYEVIIKHS AIKHQSFAHK INVAKGKDSS TLIMKLSA
Best Arabidopsis Sequence Match ( AT4G33860.1 )
(BLAST)
001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV
Arabidopsis Description
Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.