Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g111340.2.1 | Tomato | extracellular | 94.86 | 87.75 |
PGSC0003DMT400021703 | Potato | mitochondrion | 47.83 | 63.85 |
AT4G38300.1 | Thale cress | mitochondrion | 34.19 | 62.45 |
PGSC0003DMT400085040 | Potato | cytosol | 25.1 | 61.35 |
KRH51408 | Soybean | extracellular | 65.81 | 60.44 |
PGSC0003DMT400031416 | Potato | cytosol, mitochondrion | 38.54 | 57.86 |
KRH60710 | Soybean | extracellular | 63.44 | 57.63 |
Os05t0304900-01 | Rice | extracellular, vacuole | 53.56 | 54.86 |
VIT_03s0038g02180.t01 | Wine grape | cytosol | 67.19 | 54.4 |
GSMUA_Achr5P11430_001 | Banana | extracellular, vacuole | 60.08 | 53.33 |
PGSC0003DMT400059688 | Potato | cytosol, mitochondrion | 45.45 | 53.0 |
AT4G38650.1 | Thale cress | vacuole | 58.1 | 52.31 |
CDX90288 | Canola | endoplasmic reticulum, extracellular | 57.71 | 51.77 |
Bra010733.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 57.31 | 51.42 |
TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 55.93 | 50.9 |
EES10525 | Sorghum | plasma membrane, vacuole | 56.72 | 50.0 |
Zm00001d025082_P002 | Maize | endoplasmic reticulum, extracellular, plastid | 56.72 | 49.91 |
TraesCS2B01G075000.1 | Wheat | plastid | 55.93 | 49.13 |
CDY12095 | Canola | vacuole | 47.23 | 49.08 |
HORVU2Hr1G011550.11 | Barley | plasma membrane, plastid, vacuole | 55.53 | 46.52 |
PGSC0003DMT400024766 | Potato | cytosol | 33.99 | 33.66 |
PGSC0003DMT400012713 | Potato | cytosol, extracellular, nucleus | 26.09 | 33.0 |
PGSC0003DMT400032748 | Potato | endoplasmic reticulum, golgi, vacuole | 37.55 | 31.83 |
PGSC0003DMT400037865 | Potato | cytosol | 35.18 | 31.34 |
TraesCS1D01G329900.1 | Wheat | peroxisome | 4.55 | 25.84 |
PGSC0003DMT400030115 | Potato | mitochondrion | 31.82 | 17.48 |
PGSC0003DMT400012716 | Potato | mitochondrion | 33.0 | 17.27 |
Protein Annotations
Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 |
UniProt:M1A6M8 | PFAM:PF00331 | EnsemblPlantsGene:PGSC0003DMG400006180 | PGSC:PGSC0003DMG400006180 | EnsemblPlants:PGSC0003DMT400015813 | PRINTS:PR00134 |
PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF3 | SMART:SM00633 | SUPFAM:SSF51445 | UniParc:UPI000294EC8A |
Description
Endo-1,4-beta-xylanase A [Source:PGSC_GENE;Acc:PGSC0003DMG400006180]
Coordinates
chr1:-:87316007..87318162
Molecular Weight (calculated)
57676.4 Da
IEP (calculated)
5.815
GRAVY (calculated)
-0.347
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: CKSVPEDALY NGGIMKDYWT NENQVIRSET NSYNFVLNNL SGWVRILDAD SAVIKASLKT ANGTVKCVGN VIARPGCWSF LKGGFVLDFP SSYALLYLQR
101: SDGEKLNISI SSVSLQPFTY QQWKKNQQDT IDKGRKCTAI IHISDVQGER VPGASIIVEQ VSRDFPFGSA ITKTILGNPA YQTWFKERFN AAVFEDELKW
201: YSTEPQQGEV NYTIPDQMLE FVRKNQIITR GHNIFWEDPR YIPSWVRNLT GSDLKSAVNS RIQSLMNKYK NEFIHWDVDN EMLHYDFYEQ RLGTNTSLEF
301: FQTAQQLDPL AKLFMNDYNV VETCYDMNST VDAYISKLRD LKQGGIIMDG IGLEGHFTVP NPPLIRAVLD KLATLKLPIW LTEVDISKNL DKETQAKYLE
401: MVLREGFSHP GVNGIMLWTG LHSNGCYQMC LTDNNFHNLP AGDIVDNLLK EWQTGVVHGE TDEHGSFSFS VFLGEYKINV KFGNRTVNST FSLYRGDDTR
501: HINIQL
101: SDGEKLNISI SSVSLQPFTY QQWKKNQQDT IDKGRKCTAI IHISDVQGER VPGASIIVEQ VSRDFPFGSA ITKTILGNPA YQTWFKERFN AAVFEDELKW
201: YSTEPQQGEV NYTIPDQMLE FVRKNQIITR GHNIFWEDPR YIPSWVRNLT GSDLKSAVNS RIQSLMNKYK NEFIHWDVDN EMLHYDFYEQ RLGTNTSLEF
301: FQTAQQLDPL AKLFMNDYNV VETCYDMNST VDAYISKLRD LKQGGIIMDG IGLEGHFTVP NPPLIRAVLD KLATLKLPIW LTEVDISKNL DKETQAKYLE
401: MVLREGFSHP GVNGIMLWTG LHSNGCYQMC LTDNNFHNLP AGDIVDNLLK EWQTGVVHGE TDEHGSFSFS VFLGEYKINV KFGNRTVNST FSLYRGDDTR
501: HINIQL
001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
Arabidopsis Description
At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.