Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g111340.2.1 Tomato extracellular 94.86 87.75
PGSC0003DMT400021703 Potato mitochondrion 47.83 63.85
AT4G38300.1 Thale cress mitochondrion 34.19 62.45
PGSC0003DMT400085040 Potato cytosol 25.1 61.35
KRH51408 Soybean extracellular 65.81 60.44
PGSC0003DMT400031416 Potato cytosol, mitochondrion 38.54 57.86
KRH60710 Soybean extracellular 63.44 57.63
Os05t0304900-01 Rice extracellular, vacuole 53.56 54.86
VIT_03s0038g02180.t01 Wine grape cytosol 67.19 54.4
GSMUA_Achr5P11430_001 Banana extracellular, vacuole 60.08 53.33
PGSC0003DMT400059688 Potato cytosol, mitochondrion 45.45 53.0
AT4G38650.1 Thale cress vacuole 58.1 52.31
CDX90288 Canola endoplasmic reticulum, extracellular 57.71 51.77
Bra010733.1-P Field mustard endoplasmic reticulum, plasma membrane 57.31 51.42
TraesCS2A01G061600.1 Wheat extracellular, plasma membrane, vacuole 55.93 50.9
EES10525 Sorghum plasma membrane, vacuole 56.72 50.0
Zm00001d025082_P002 Maize endoplasmic reticulum, extracellular, plastid 56.72 49.91
TraesCS2B01G075000.1 Wheat plastid 55.93 49.13
CDY12095 Canola vacuole 47.23 49.08
HORVU2Hr1G011550.11 Barley plasma membrane, plastid, vacuole 55.53 46.52
PGSC0003DMT400024766 Potato cytosol 33.99 33.66
PGSC0003DMT400012713 Potato cytosol, extracellular, nucleus 26.09 33.0
PGSC0003DMT400032748 Potato endoplasmic reticulum, golgi, vacuole 37.55 31.83
PGSC0003DMT400037865 Potato cytosol 35.18 31.34
TraesCS1D01G329900.1 Wheat peroxisome 4.55 25.84
PGSC0003DMT400030115 Potato mitochondrion 31.82 17.48
PGSC0003DMT400012716 Potato mitochondrion 33.0 17.27
Protein Annotations
Gene3D:3.20.20.80MapMan:35.1InterPro:GH10GO:GO:0003674GO:GO:0003824GO:GO:0004553
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787InterPro:Glycoside_hydrolase_SFInterPro:IPR001000
UniProt:M1A6M8PFAM:PF00331EnsemblPlantsGene:PGSC0003DMG400006180PGSC:PGSC0003DMG400006180EnsemblPlants:PGSC0003DMT400015813PRINTS:PR00134
PFscan:PS51760PANTHER:PTHR31490PANTHER:PTHR31490:SF3SMART:SM00633SUPFAM:SSF51445UniParc:UPI000294EC8A
Description
Endo-1,4-beta-xylanase A [Source:PGSC_GENE;Acc:PGSC0003DMG400006180]
Coordinates
chr1:-:87316007..87318162
Molecular Weight (calculated)
57676.4 Da
IEP (calculated)
5.815
GRAVY (calculated)
-0.347
Length
506 amino acids
Sequence
(BLAST)
001: CKSVPEDALY NGGIMKDYWT NENQVIRSET NSYNFVLNNL SGWVRILDAD SAVIKASLKT ANGTVKCVGN VIARPGCWSF LKGGFVLDFP SSYALLYLQR
101: SDGEKLNISI SSVSLQPFTY QQWKKNQQDT IDKGRKCTAI IHISDVQGER VPGASIIVEQ VSRDFPFGSA ITKTILGNPA YQTWFKERFN AAVFEDELKW
201: YSTEPQQGEV NYTIPDQMLE FVRKNQIITR GHNIFWEDPR YIPSWVRNLT GSDLKSAVNS RIQSLMNKYK NEFIHWDVDN EMLHYDFYEQ RLGTNTSLEF
301: FQTAQQLDPL AKLFMNDYNV VETCYDMNST VDAYISKLRD LKQGGIIMDG IGLEGHFTVP NPPLIRAVLD KLATLKLPIW LTEVDISKNL DKETQAKYLE
401: MVLREGFSHP GVNGIMLWTG LHSNGCYQMC LTDNNFHNLP AGDIVDNLLK EWQTGVVHGE TDEHGSFSFS VFLGEYKINV KFGNRTVNST FSLYRGDDTR
501: HINIQL
Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)
001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI
Arabidopsis Description
At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.