Factsheet for VIT_03s0038g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 3
mitochondrion 1
plastid 1
golgi 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular, golgi, mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51408	Soybean	extracellular	61.6	69.87
AT4G38300.1	Thale cress	mitochondrion	30.56	68.95
KRH60710	Soybean	extracellular	60.8	68.22
PGSC0003DMT400015813	Potato	cytosol	54.4	67.19
Solyc01g111340.2.1	Tomato	extracellular	55.52	63.44
AT4G38650.1	Thale cress	vacuole	56.32	62.63
CDX90288	Canola	endoplasmic reticulum, extracellular	55.04	60.99
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	54.88	60.82
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	55.36	60.7
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	31.84	59.05
CDY12095	Canola	vacuole	45.92	58.93
Os05t0304900-01	Rice	extracellular, vacuole	45.92	58.1
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	50.4	56.65
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	38.72	55.76
EES10525	Sorghum	plasma membrane, vacuole	50.88	55.4
TraesCS2B01G075000.1	Wheat	plastid	50.72	55.03
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	50.24	54.61
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	50.4	52.15
PGSC0003DMT400085040	Potato	cytosol	16.8	50.72
Solyc10g055370.1.1	Tomato	vacuole	45.28	50.45
Solyc10g055340.1.1	Tomato	cytosol	17.28	49.09
VIT_03s0091g00900.t01	Wine grape	cytosol	32.0	35.91
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	31.04	35.21
VIT_03s0091g00950.t01	Wine grape	cytosol	30.88	34.96
VIT_03s0091g00880.t01	Wine grape	vacuole	32.96	34.62
VIT_18s0001g08370.t01	Wine grape	mitochondrion	27.68	18.27

Protein Annotations

EntrezGene:100248768	wikigene:100248768	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	ProteinID:CBI37893
ProteinID:CBI37893.3	UniProt:D7U574	EMBL:FN596508	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EntrezGene:LOC100248768	wikigene:LOC100248768	PFAM:PF00331
PRINTS:PR00134	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	UniParc:UPI0001BE4BCE	ArrayExpress:VIT_03s0038g02180	EnsemblPlantsGene:VIT_03s0038g02180	EnsemblPlants:VIT_03s0038g02180.t01	RefSeq:XP_002277675
RefSeq:XP_002277675.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:1497491..1500305

Molecular Weight (calculated)

70556.5 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.190

Length

625 amino acids

Sequence
(BLAST)

001: MRFELYPSLY SHEGLPYCLA CEQGTGLLRT CTISLLQGLS RDQEHDVWSA LLLPASLLPC RPSISCSLWY HLSLSHPHWF QYLMLMGVFS FFDLVSNTAD
101: GPLYDFSAYT QCKTRAEGPL YNGGILKGAR WDIPRVLADG VYSPAFVLRN LTTGTKYCFS SWVKIKGADS APIRASLMSE KKTINCVGTV TARRGCWSFL
201: KGGFVLDEPL DYSLLFFQNS DERAVDLAIT SASLQPFTDQ EWSTNQQYII NTERKRAVTI HVANTQGERL QGAEITVDQV SKDFPFGSAI AKTILGNLPY
301: QNWFVKRFNA AVFENELKWY ATEPDPGNIT YALADQMLEF VRANQIVARG HNIFWEDPKY TPAWVRNLSG PALQSAVNNR IQSLMSKYKD EFVHWDVSNE
401: MLHFDFYEQR LGPDATLHFY ETAHESDPLA TLFMNDFNVV ETCSDVNSTV DAYISRLREL SRGGATMSGI GLEGHFTIPN PPLIRAILDK LATLQLPIWL
501: TEIDISNTLS KETQAVYLEQ VLREGFSHPS VNGIMLWTAL HSYGCYQMCL TDNNFHNLPA GDVVDKILKE WQTGEIGGQT DDHGSYSFFG FLGEYQVTVR
601: YGNRTANSTF SLCRGDETRH FSIQL

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.