Factsheet for PGSC0003DMT400085040

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031416	Potato	cytosol, mitochondrion	41.06	25.22
PGSC0003DMT400015813	Potato	cytosol	61.35	25.1
PGSC0003DMT400021703	Potato	mitochondrion	43.0	23.48
Solyc01g111340.2.1	Tomato	extracellular	59.9	22.67
TraesCS1D01G329900.1	Wheat	peroxisome	9.18	21.35
PGSC0003DMT400059688	Potato	cytosol, mitochondrion	41.55	19.82
CDY12095	Canola	vacuole	44.44	18.89
KRH51408	Soybean	extracellular	49.76	18.69
KRH60710	Soybean	extracellular	48.31	17.95
Os05t0304900-01	Rice	extracellular, vacuole	42.51	17.81
AT4G38650.1	Thale cress	vacuole	46.38	17.08
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	46.38	16.84
VIT_03s0038g02180.t01	Wine grape	cytosol	50.72	16.8
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	43.0	16.01
CDX90288	Canola	endoplasmic reticulum, extracellular	43.48	15.96
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	43.48	15.96
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	43.96	15.83
EES10525	Sorghum	plasma membrane, vacuole	43.48	15.68
TraesCS2B01G075000.1	Wheat	plastid	43.48	15.62
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	43.48	14.9
AT4G38300.1	Thale cress	mitochondrion	17.39	13.0
PGSC0003DMT400024766	Potato	cytosol	28.5	11.55
PGSC0003DMT400037865	Potato	cytosol	28.99	10.56
PGSC0003DMT400032748	Potato	endoplasmic reticulum, golgi, vacuole	29.95	10.39
PGSC0003DMT400012713	Potato	cytosol, extracellular, nucleus	14.98	7.75
PGSC0003DMT400030115	Potato	mitochondrion	25.6	5.75
PGSC0003DMT400012716	Potato	mitochondrion	25.12	5.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400085040	EnsemblPlantsGene:PGSC0003DMG400034611	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GH10	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001000	PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	PFscan:PS51760	PGSC:PGSC0003DMG400034611	SUPFAM:SSF51445
UniParc:UPI000296E919	UniProt:M1D8M2	MapMan:35.1	:	:	:

Description

Endo-1,4-beta-xylanase A [Source:PGSC_GENE;Acc:PGSC0003DMG400034611]

Coordinates

chr3:-:7675648..7677920

Molecular Weight (calculated)

23419.4 Da

IEP (calculated)

6.599

GRAVY (calculated)

0.062

Length

207 amino acids

Sequence
(BLAST)

001: MEGIGLEGHF TVPNPPLIRA VLDKLAILKL PIWLTEVDIS KNLDKEIQIR AKYVEMVLRE GFSHPGVNGI MLWTGLHSNG CYQMCLTDTN FHNLPAGDIV
101: DNLLKEWQTG VVQGETDEHG SFSFSVFLVL TIDARCVELM LLSFFTGEGG NWWHHLRVAI VVGRRPPGHL DARRLEMLAA IEVHWWSLSA YWRSPLLFAA
201: RSPRYTG

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.