Factsheet for VIT_03s0091g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
vacuole 1
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00950.t01	Wine grape	cytosol	67.33	67.93
VIT_03s0091g00880.t01	Wine grape	vacuole	67.5	63.19
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	60.86	61.52
KRH29254	Soybean	cytosol	56.19	55.3
AT4G33860.1	Thale cress	plasma membrane, vacuole	56.37	54.51
CDY28323	Canola	vacuole	54.22	54.22
CDY69164	Canola	vacuole	54.94	53.4
Bra034585.1-P	Field mustard	vacuole	54.76	53.23
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	54.76	53.23
CDY48434	Canola	vacuole	54.76	53.23
Bra034584.1-P	Field mustard	vacuole	54.58	53.05
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	54.22	52.61
AT4G33840.1	Thale cress	vacuole	54.4	52.6
CDY49378	Canola	plasma membrane, vacuole	53.86	52.45
AT4G33830.1	Thale cress	vacuole	54.22	52.43
CDY48433	Canola	vacuole	54.4	52.33
CDY28325	Canola	vacuole	54.04	51.99
KRH29253	Soybean	extracellular, vacuole	51.89	51.06
KXG39936	Sorghum	extracellular, vacuole	52.42	50.61
Os03t0201901-00	Rice	cytosol	51.35	50.18
Zm00001d028103_P001	Maize	extracellular, vacuole	51.71	49.66
TraesCS4D01G259100.1	Wheat	vacuole	51.71	49.4
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	50.27	49.21
TraesCS4B01G259400.1	Wheat	vacuole	51.35	49.06
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.09	48.95
TraesCS4A01G045800.1	Wheat	vacuole	51.17	48.89
TraesCS4B01G259100.1	Wheat	vacuole	49.91	48.77
EER92683	Sorghum	vacuole	50.81	48.46
Os03t0201500-01	Rice	vacuole	49.91	48.43
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.73	48.26
Zm00001d048151_P001	Maize	vacuole	49.19	47.16
Solyc01g106990.1.1	Tomato	vacuole	48.11	46.45
HORVU4Hr1G070260.12	Barley	vacuole	50.63	46.15
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	48.47	46.15
Bra017609.1-P	Field mustard	nucleus	55.12	46.03
PGSC0003DMT400037865	Potato	cytosol	46.32	45.42
HORVU2Hr1G113150.1	Barley	cytosol	43.09	44.78
Solyc05g051260.2.1	Tomato	golgi, vacuole	45.78	44.19
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	52.06	44.07
Zm00001d030468_P001	Maize	cytosol	46.14	43.63
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	44.52	43.21
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	44.34	43.03
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	43.81	42.51
HORVU1Hr1G023120.1	Barley	extracellular	43.81	42.43
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	45.78	42.36
Os10t0351700-01	Rice	plasma membrane	43.81	42.0
HORVU5Hr1G056740.1	Barley	vacuole	44.52	41.89
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	43.99	41.74
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	43.63	41.61
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	43.81	41.57
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	43.81	41.57
TraesCS2B01G537100.1	Wheat	vacuole	42.73	41.46
TraesCSU01G021800.1	Wheat	extracellular, vacuole	43.45	41.37
TraesCS2D01G510500.1	Wheat	vacuole	42.55	41.29
TraesCS2A01G584800.1	Wheat	plastid, vacuole	43.63	39.9
Os10t0351600-00	Rice	cytosol	41.29	39.18
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	40.04	38.99
Os03t0201800-01	Rice	extracellular	39.14	37.46
CDX72434	Canola	cytosol, vacuole	55.48	35.23
VIT_03s0038g02180.t01	Wine grape	cytosol	35.91	32.0
GSMUA_Achr1P12520_001	Banana	mitochondrion	45.24	27.51
GSMUA_Achr1P12510_001	Banana	cytosol	42.91	24.95
Solyc01g106980.1.1	Tomato	cytosol	48.29	24.37
VIT_18s0001g08370.t01	Wine grape	mitochondrion	29.98	17.63

Protein Annotations

EntrezGene:100265242	wikigene:100265242	Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	ProteinID:CBI22449
ProteinID:CBI22449.3	InterPro:CenC_carb-bd	UniProt:D7SXP9	EMBL:FN595242	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EntrezGene:LOC100265242
wikigene:LOC100265242	PFAM:PF00331	PFAM:PF02018	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF2
SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0001BE1EA4	ArrayExpress:VIT_03s0091g00900	EnsemblPlantsGene:VIT_03s0091g00900
EnsemblPlants:VIT_03s0091g00900.t01	RefSeq:XP_002264652	RefSeq:XP_002264652.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:7389633..7402240

Molecular Weight (calculated)

61351.6 Da

IEP (calculated)

7.652

GRAVY (calculated)

-0.288

Length

557 amino acids

Sequence
(BLAST)

001: MVLLKTKKYN FQCLEKPLRP QYGGGMILNP DLNDGLKGWS VSGGAKIEER VSGGGNRFIV AHSRSHKNDS VSQKLYMKKD KLYTFSAWIQ VSSRSASVAA
101: AFRTNGGVKY AGAIIAETGC WSMLKGGLTV EGSGPAQLYF ESNDTSVEIW VDSVSLQPFT KEEWRTHQDQ SVEKTRKTKV RLQAVDGRGN PVAGAKMAVT
201: LAKRSFPFGA VISDYILQNT AFQNWFTSRF SVATFANEMK WYSTENSRGV ENYKVADDML QFCKQNGIAV RGHNILWDDP KYQPSWVNSL SPGDLQAAVD
301: RRINSIASRY KGQVIAWDVV NENLHFSFFE DRLGASASAA AFQKTRQIDG TVELFMNEYN TIEERGDGAS SPAKYLQKLG EIQAFLGGGS GPLAIGLEGH
401: FGSAPNLPYV RSSIDTLAAK NLPIWVTEVD VSNMTDQAMH FQQILEEVHA HPAVKGIVTW GTWDPRGCYR MCLTDGNFNN LPTGDVLDKI LRQWSIAGMV
501: GVTDANGVFE ASLFHGDYEV TISHPTVMKS SLTQSFKVAP SADTSHQTTV LLVEVSP

Best Arabidopsis Sequence Match ( AT4G33860.1 )
(BLAST)

001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV

Arabidopsis Description

Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.