CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	94.28	82.67
Os03t0201500-01	Rice	vacuole	77.47	77.87
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.56	76.49
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	76.08	76.48
TraesCS4B01G259100.1	Wheat	vacuole	75.39	76.32
EER92683	Sorghum	vacuole	65.68	64.9
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	53.73	54.48
VIT_03s0091g00900.t01	Wine grape	cytosol	50.61	52.42
VIT_03s0091g00950.t01	Wine grape	cytosol	49.05	51.27
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	52.69	50.5
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	48.18	50.45
KRH29254	Soybean	cytosol	49.39	50.35
CDY69164	Canola	vacuole	49.91	50.26
Bra034585.1-P	Field mustard	vacuole	49.74	50.09
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	49.74	50.09
VIT_03s0091g00880.t01	Wine grape	vacuole	51.65	50.08
AT4G33840.1	Thale cress	vacuole	49.91	50.0
AT4G33860.1	Thale cress	plasma membrane, vacuole	49.74	49.83
CDY28323	Canola	vacuole	48.01	49.73
AT4G33830.1	Thale cress	vacuole	49.57	49.65
CDY48434	Canola	vacuole	49.05	49.39
Bra034584.1-P	Field mustard	vacuole	48.7	49.04
KRH29253	Soybean	extracellular, vacuole	46.79	47.7
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	46.97	47.38
CDY49378	Canola	plasma membrane, vacuole	46.97	47.38
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	46.27	46.52
CDY48433	Canola	vacuole	46.62	46.46
CDY28325	Canola	vacuole	46.1	45.94
Solyc01g106990.1.1	Tomato	vacuole	45.58	45.58
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	45.58	44.96
PGSC0003DMT400037865	Potato	cytosol	42.81	43.49
Solyc05g051260.2.1	Tomato	golgi, vacuole	42.98	42.98
Bra017609.1-P	Field mustard	nucleus	48.18	41.68
EER95184	Sorghum	vacuole	37.09	38.21
EES10525	Sorghum	plasma membrane, vacuole	37.78	37.98
CDX72434	Canola	cytosol, vacuole	48.18	31.7
GSMUA_Achr1P12520_001	Banana	mitochondrion	48.53	30.57
GSMUA_Achr1P12510_001	Banana	cytosol	46.79	28.18
EES00361	Sorghum	cytosol	26.34	26.95
EES00362	Sorghum	cytosol	26.0	25.25
Solyc01g106980.1.1	Tomato	cytosol	44.71	23.37
EER93683	Sorghum	cytosol	29.29	22.59
KXG30265	Sorghum	plastid	24.78	22.34
EER96324	Sorghum	mitochondrion	29.98	15.76

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	UniProt:A0A1B6QPT9	InterPro:GH10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EnsemblPlants:KXG39936	ProteinID:KXG39936
ProteinID:KXG39936.1	PFAM:PF00331	PFscan:PS51257	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF13
MetaCyc:PWY-6784	SMART:SM00633	EnsemblPlantsGene:SORBI_3001G466400	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI00081AB6EA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:73985419..73988734

Molecular Weight (calculated)

62927.3 Da

IEP (calculated)

5.981

GRAVY (calculated)

-0.104

Length

577 amino acids

Sequence
(BLAST)

001: MTKVNGLVDK LAFWLGWIAL LQGCMVKSLP YDYSASIECL PEPLEPQYGG GILRNADFSA GLRGWSTFGY GSIAESKSAA GNGFAVALNR TRAYQSVSQK
101: VYLQGDTHYT LSAWLQVSDA SADVRAVVKT VGDFVHAGGV VAKAGCWSML KGGLTAASSG PAELYFESNA TVDLWVDSVS LKPFSKDEWT AHRAQSVVAA
201: RKKTVRLQAT DSAGNPLEGA AVSLDAVRTN FPLGAAVSRY ILTNSAYQTW FASRFAVATF ENEMKWYSTE PAPGREDYTV PDAMMAFAKS NGIAVRGHNV
301: FWDQPSQQPG WVQSLPYPQL LAAASRRIRS VMSRYAGQVI GWDVVNENLH FNFYEGRFGW DASTAFYAAA RLLDTGSALM FLNEYNTLEQ PGDMAALPAR
401: YLQRLQQIIA AYPENGAGMA IGLEGHFTKP NIPYMRAALD TLAQAGIPVW LTEVDVAPGP SQAQHLEEVL REAYAHPAVQ GIVIWSAWQP QGCYVMCLTD
501: NNFKNLPQGD VVDRLIAEWR ASPRAGATDA QGYFEADLVH GEYKVTVSHP ALNSSISRSV KVELGSGSEH YFIDMQV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.