Factsheet for Solyc01g107000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106990.1.1	Tomato	vacuole	51.11	51.82
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	46.84	49.73
Solyc05g051260.2.1	Tomato	golgi, vacuole	48.89	49.57
VIT_03s0091g00900.t01	Wine grape	cytosol	46.15	48.47
VIT_03s0091g00950.t01	Wine grape	cytosol	45.13	47.83
KRH29254	Soybean	cytosol	46.15	47.7
VIT_03s0091g00880.t01	Wine grape	vacuole	47.01	46.22
CDY69164	Canola	vacuole	44.79	45.72
KXG39936	Sorghum	extracellular, vacuole	44.96	45.58
Bra034585.1-P	Field mustard	vacuole	44.62	45.55
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	43.93	44.85
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	43.25	44.46
CDY28323	Canola	vacuole	42.22	44.34
AT4G33860.1	Thale cress	plasma membrane, vacuole	43.59	44.27
Os03t0201500-01	Rice	vacuole	43.42	44.25
Os03t0201901-00	Rice	cytosol	43.08	44.21
Zm00001d028103_P001	Maize	extracellular, vacuole	43.76	44.14
TraesCS4B01G259100.1	Wheat	vacuole	42.73	43.86
TraesCS4D01G259500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.73	43.86
EER92683	Sorghum	vacuole	43.76	43.84
Bra034584.1-P	Field mustard	vacuole	42.73	43.63
TraesCS4A01G045500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.73	43.55
CDY48434	Canola	vacuole	42.56	43.46
AT4G33840.1	Thale cress	vacuole	42.73	43.4
KRH29253	Soybean	extracellular, vacuole	41.54	42.93
AT4G33830.1	Thale cress	vacuole	42.22	42.88
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	42.05	42.86
CDY48433	Canola	vacuole	42.39	42.83
CDY28325	Canola	vacuole	42.22	42.66
TraesCS4D01G259100.1	Wheat	vacuole	42.39	42.54
TraesCS4B01G259400.1	Wheat	vacuole	42.22	42.37
TraesCS4A01G045800.1	Wheat	vacuole	42.22	42.37
Zm00001d048151_P001	Maize	vacuole	41.54	41.82
CDY49378	Canola	plasma membrane, vacuole	40.68	41.61
TraesCS5D01G194800.1	Wheat	plasma membrane, vacuole	41.37	41.23
HORVU5Hr1G056740.1	Barley	vacuole	41.71	41.22
TraesCS1D01G107700.1	Wheat	extracellular, vacuole	40.0	40.77
TraesCS1B01G124500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.0	40.77
TraesCS5A01G196600.1	Wheat	plasma membrane, vacuole	40.85	40.72
TraesCS5A01G196500.1	Wheat	plasma membrane, vacuole	40.85	40.72
Os10t0351700-01	Rice	plasma membrane	40.34	40.62
HORVU4Hr1G070260.12	Barley	vacuole	42.22	40.43
Solyc01g105500.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	39.66	40.42
Zm00001d030468_P001	Maize	cytosol	40.68	40.41
TraesCSU01G021800.1	Wheat	extracellular, vacuole	40.34	40.34
HORVU2Hr1G113150.1	Barley	cytosol	36.92	40.3
HORVU2Hr1G122890.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	40.17	40.24
TraesCS1A01G107100.1	Wheat	extracellular, vacuole	39.32	40.07
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	41.2	40.03
HORVU1Hr1G023120.1	Barley	extracellular	39.32	40.0
EER92684	Sorghum	endoplasmic reticulum, extracellular, vacuole	38.8	39.69
TraesCS2B01G537100.1	Wheat	vacuole	38.8	39.55
TraesCS2D01G510500.1	Wheat	vacuole	38.63	39.37
Zm00001d048152_P001	Maize	cytosol, extracellular, vacuole	43.93	39.06
TraesCS2A01G584800.1	Wheat	plastid, vacuole	40.17	38.59
Os03t0201800-01	Rice	extracellular	37.44	37.63
Solyc11g043160.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	37.09	37.41
Bra017609.1-P	Field mustard	nucleus	42.56	37.33
Os10t0351600-00	Rice	cytosol	36.58	36.46
Solyc01g111340.2.1	Tomato	extracellular	33.85	36.2
Solyc10g055340.1.1	Tomato	cytosol	12.99	34.55
Solyc11g040330.1.1	Tomato	extracellular	32.14	34.24
Solyc10g055370.1.1	Tomato	vacuole	32.48	33.87
CDX72434	Canola	cytosol, vacuole	42.05	28.05
Solyc01g106980.1.1	Tomato	cytosol	49.06	26.0
GSMUA_Achr1P12520_001	Banana	mitochondrion	39.49	25.22
Solyc04g077200.1.1	Tomato	cytosol	4.27	24.27
GSMUA_Achr1P12510_001	Banana	cytosol	36.41	22.23
Solyc12g088210.1.1	Tomato	mitochondrion	29.4	18.68
Solyc04g077190.2.1	Tomato	extracellular	30.09	15.38

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	InterPro:GH10_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K4B2R7	PFAM:PF00331
ScanProsite:PS00591	PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF2	SMART:SM00633	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g107000.1	EnsemblPlants:Solyc01g107000.1.1	UniParc:UPI0002767AA2	SEG:seg

Description

No Description!

Coordinates

chr1:-:94689606..94692810

Molecular Weight (calculated)

66316.7 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.344

Length

585 amino acids

Sequence
(BLAST)

001: METVKMEHFL PWLVIFFLVC CSGVEVCGED YDYSFTSECL ADPLSAQYNG GIVVNPNFNE GLNGWRKSGF ANIATRMSNN TNNTFIVATN RKGPLHGFTQ
101: KYFLKKDTYY VTSAWVQVSH ADGIIDAHVA LAVRGPLGIQ RTGWAIARSG CWSMLKGGLI ILTTSAHVDL YLEANNTAIE LWADSISVKP FSQEEWKFHQ
201: HQSTEKIRKA KVKIQAVDSH GQPLPNATVS LAQQKNNFPF GNAISQHILN NKAYQDWFTS RFKYTVFENE MKWYANEKIQ GKQDYNMADA MLSLVQKHNI
301: QVRGHNIFWN NLLNMPSWTR SLSPAQLAAA ASRRINSVMN QYLGQLMHWD VVNENVHFSF LENILGKNAS AVYYKKANEI DSRAIPFLND FNTIEHGFDG
401: TSNPAKYLEK IRDLRSHGYN GPLGIGVQGH FVKPNLPYIR SSLDMLASAG LPIWITELDV ANTTNQEVYL EEIIREVHAH PGLKGIMIWA PWGPKGCYRM
501: CLTDNNFKNL ATGDIVDKII KEWSHQGFSG TTNENGIIET SLFHGEYQVE INHHEKQTYA LMTQKLKVEA QKDETKENSH YTIFV

Best Arabidopsis Sequence Match ( AT4G33840.1 )
(BLAST)

001: MKLLLLLLAF CCLSLSRCEE QSVPYDYSAT IECLENPYKP QYNGGIIVNP DLQNGSQGWS QFGNAKVDFR EFGGNKFVVA TQRNQSSDSI SQKVYLEKGI
101: LYTFSAWLQV SIGKSPVSAV FKKNGEYKHA GSVVAESKCW SMLKGGLTVD ESGPAELFFE SENTMVEIWV DSVSLQPFTQ EEWNSHHEQS IGKVRKGTVR
201: IRVMNNKGET IPNATISIEQ KKLGYPFGCA VENNILGNQA YQNWFTQRFT VTTFGNEMKW YSTERIRGQE DYSTADAMLS FFKSHGIAVR GHNVLWDDPK
301: YQPGWVNSLS GNDLYNAVKR RVYSVVSRYK GQLLGWDVVN ENLHFSFFES KFGPKASYNT YTMAHAVDPR TPMFMNEYNT LEQPKDLTSS PARYLGKLRE
401: LQSIRVAGKI PLAIGLESHF STPNIPYMRS ALDTFGATGL PIWLTEIDVD APPNVRANYF EQVLREGHAH PKVNGMVMWT GYSPSGCYRM CLTDGNFKNL
501: PTGDVVDKLL REWGGLRSQT TGVTDANGLF EAPLFHGDYD LRISHPLTNS KASYNFTLTS DDDSSQKQPS LYVFRV

Arabidopsis Description

At4g33840/F17I5_30 [Source:UniProtKB/TrEMBL;Acc:Q6NQI6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.