Factsheet for Solyc11g040330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
vacuole 4
extracellular 5
endoplasmic reticulum 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021703	Potato	mitochondrion	65.76	95.25
AT4G38300.1	Thale cress	mitochondrion	30.42	60.29
Solyc01g111340.2.1	Tomato	extracellular	55.74	55.94
AT4G38650.1	Thale cress	vacuole	55.74	54.45
CDX90288	Canola	endoplasmic reticulum, extracellular	55.19	53.72
GSMUA_Achr5P11430_001	Banana	extracellular, vacuole	55.56	53.51
Bra010733.1-P	Field mustard	endoplasmic reticulum, plasma membrane	54.28	52.84
Os05t0304900-01	Rice	extracellular, vacuole	46.08	51.21
CDY12095	Canola	vacuole	45.17	50.92
Solyc10g055340.1.1	Tomato	cytosol	20.4	50.91
Solyc10g055370.1.1	Tomato	vacuole	50.46	49.38
EES10525	Sorghum	plasma membrane, vacuole	51.0	48.78
TraesCS2A01G061600.1	Wheat	extracellular, plasma membrane, vacuole	49.36	48.74
Zm00001d025082_P002	Maize	endoplasmic reticulum, extracellular, plastid	51.0	48.7
TraesCS2B01G075000.1	Wheat	plastid	49.73	47.4
HORVU2Hr1G011550.11	Barley	plasma membrane, plastid, vacuole	50.09	45.53
Solyc04g077200.1.1	Tomato	cytosol	6.19	33.01
Solyc01g105500.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	34.43	32.93
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	34.24	32.14
Solyc01g106990.1.1	Tomato	vacuole	33.7	32.06
Solyc05g051260.2.1	Tomato	golgi, vacuole	33.15	31.54
Solyc11g043160.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	32.06	30.34
Solyc12g088210.1.1	Tomato	mitochondrion	28.05	16.72
Solyc01g106980.1.1	Tomato	cytosol	33.52	16.67
Solyc04g077190.2.1	Tomato	extracellular	31.33	15.04

Protein Annotations

Gene3D:2.60.120.260	Gene3D:3.20.20.80	MapMan:35.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	UniProt:K4D804	PFAM:PF00331	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF3	SMART:SM00633	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g040330.1
EnsemblPlants:Solyc11g040330.1.1	UniParc:UPI0002769F91	:	:	:	:

Description

No Description!

Coordinates

chr11:-:37865413..37873842

Molecular Weight (calculated)

62439.8 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.319

Length

549 amino acids

Sequence
(BLAST)

001: MKRMRSHAMF SLSFLYWMLS VSPYDGPLYD SSAFSECKQY PEKPLYAGGI LKDNLPEFTR ADGITTVNLP IFKLQDITPG TIYSFSTWIK IKNADSAVIT
101: ASVGDQDSDE LCVGTVDAKP GCWSFLKGGF VASSLNISSI YLKNSDEQDL EIEIASASLQ PFTEQQWLLN QQTKINMARK RAVTIHVSNK QGVRLENASL
201: TVEQVSKDFL LGSAIAYTFI GNIPYQNWFL ERFNAAVFED EIKWYTTEPK QGQLNYTLAD ELLEFVRRNQ ITVRGHNIFW EDPKYIPAWV QNLTDSELKS
301: AVNSRIQSLM SKYKDEFVHW DVNNELLHFN FYEQRLGPDA THEFYRTVHQ QDPLATLFLN EFNVVETCDS SSTVDKYIAK IRELKEDRMS MNGIGLEGHF
401: GAPNPPRIRA TLDKLATLGL PIWLTEVDIS DTFSKETQAI YLEQVLREGF SHPAVDGIML WSAIRRNKCY RMCLTDPDLN NLPTGNVVDK LLKEWDTGVL
501: KGQTDEHGSY SFYGFLGEYK LTASYDGKVV DAAFSLSPSH ETKHFSVQL

Best Arabidopsis Sequence Match ( AT4G38650.1 )
(BLAST)

001: MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE
101: AGAASAHVRA RLRADNATLN CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN NQDYFINTAR KRAVTIHVSK
201: ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW
301: VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD
401: GVRMDGIGLE GHFTTPNVAL MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN GCYQMCLTDD KFRNLPAGDV
501: VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG KTVNSSFSLS QGPETKHVRL QI

Arabidopsis Description

At4g38650 [Source:UniProtKB/TrEMBL;Acc:Q84VX1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.