Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- plastid 1
- peroxisome 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33840.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g00950.t01 | Wine grape | cytosol | 63.36 | 68.3 |
| VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 62.52 | 67.51 |
| VIT_03s0091g00900.t01 | Wine grape | cytosol | 63.19 | 67.5 |
| KRH29254 | Soybean | cytosol | 55.29 | 58.13 |
| AT4G33860.1 | Thale cress | plasma membrane, vacuole | 55.97 | 57.81 |
| CDY69164 | Canola | vacuole | 55.13 | 57.24 |
| CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.13 | 57.24 |
| CDY28323 | Canola | vacuole | 53.45 | 57.09 |
| Bra034585.1-P | Field mustard | vacuole | 54.62 | 56.72 |
| CDY48434 | Canola | vacuole | 54.12 | 56.2 |
| AT4G33840.1 | Thale cress | vacuole | 54.12 | 55.9 |
| Bra034584.1-P | Field mustard | vacuole | 53.78 | 55.85 |
| Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 53.45 | 55.4 |
| AT4G33830.1 | Thale cress | vacuole | 53.61 | 55.38 |
| CDY48433 | Canola | vacuole | 53.78 | 55.27 |
| CDY28325 | Canola | vacuole | 53.11 | 54.58 |
| CDY49378 | Canola | plasma membrane, vacuole | 51.93 | 54.02 |
| KRH29253 | Soybean | extracellular, vacuole | 51.26 | 53.89 |
| GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 50.76 | 53.08 |
| Os03t0201901-00 | Rice | cytosol | 50.76 | 52.98 |
| KXG39936 | Sorghum | extracellular, vacuole | 50.08 | 51.65 |
| Zm00001d028103_P001 | Maize | extracellular, vacuole | 49.75 | 51.03 |
| Solyc01g106990.1.1 | Tomato | vacuole | 49.41 | 50.95 |
| Os03t0201500-01 | Rice | vacuole | 48.91 | 50.7 |
| EER92683 | Sorghum | vacuole | 49.75 | 50.68 |
| TraesCS4B01G259400.1 | Wheat | vacuole | 49.41 | 50.43 |
| TraesCS4D01G259100.1 | Wheat | vacuole | 49.08 | 50.09 |
| PGSC0003DMT400037865 | Potato | cytosol | 47.4 | 49.65 |
| TraesCS4D01G259500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 47.4 | 49.47 |
| TraesCS4A01G045800.1 | Wheat | vacuole | 48.4 | 49.4 |
| TraesCS4B01G259100.1 | Wheat | vacuole | 47.23 | 49.3 |
| TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 47.4 | 49.13 |
| Zm00001d048151_P001 | Maize | vacuole | 47.56 | 48.71 |
| Solyc05g051260.2.1 | Tomato | golgi, vacuole | 46.89 | 48.35 |
| Bra017609.1-P | Field mustard | nucleus | 53.78 | 47.98 |
| HORVU2Hr1G113150.1 | Barley | cytosol | 43.03 | 47.76 |
| HORVU4Hr1G070260.12 | Barley | vacuole | 48.57 | 47.3 |
| Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 46.22 | 47.01 |
| HORVU1Hr1G023120.1 | Barley | extracellular | 45.04 | 46.61 |
| TraesCS1B01G124500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.87 | 46.52 |
| TraesCS1D01G107700.1 | Wheat | extracellular, vacuole | 44.54 | 46.17 |
| TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 44.37 | 45.99 |
| TraesCS2B01G537100.1 | Wheat | vacuole | 44.37 | 45.99 |
| Os10t0351700-01 | Rice | plasma membrane | 44.71 | 45.78 |
| TraesCS2D01G510500.1 | Wheat | vacuole | 44.03 | 45.64 |
| KXG34533 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 46.05 | 45.51 |
| Zm00001d030468_P001 | Maize | cytosol | 45.04 | 45.5 |
| Zm00001d048152_P001 | Maize | cytosol, extracellular, vacuole | 50.08 | 45.29 |
| TraesCS5D01G194800.1 | Wheat | plasma membrane, vacuole | 43.87 | 44.46 |
| TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 43.7 | 44.29 |
| TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 43.7 | 44.29 |
| HORVU2Hr1G122890.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 43.19 | 44.01 |
| HORVU5Hr1G056740.1 | Barley | vacuole | 43.7 | 43.92 |
| TraesCSU01G021800.1 | Wheat | extracellular, vacuole | 43.03 | 43.76 |
| TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 43.36 | 42.36 |
| EER92684 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 39.16 | 40.73 |
| Os10t0351600-00 | Rice | cytosol | 39.5 | 40.03 |
| Os03t0201800-01 | Rice | extracellular | 37.31 | 38.14 |
| CDX72434 | Canola | cytosol, vacuole | 53.45 | 36.26 |
| VIT_03s0038g02180.t01 | Wine grape | cytosol | 34.62 | 32.96 |
| GSMUA_Achr1P12520_001 | Banana | mitochondrion | 45.71 | 29.69 |
| GSMUA_Achr1P12510_001 | Banana | cytosol | 43.36 | 26.93 |
| Solyc01g106980.1.1 | Tomato | cytosol | 48.74 | 26.27 |
| VIT_18s0001g08370.t01 | Wine grape | mitochondrion | 28.57 | 17.95 |
Protein Annotations
| EntrezGene:100248080 | wikigene:100248080 | Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | EMBL:AM478479 |
| ProteinID:CAN61986 | ProteinID:CAN61986.1 | ProteinID:CCB47700 | ProteinID:CCB47700.1 | InterPro:CenC_carb-bd | UniProt:F6H655 |
| EMBL:FN595242 | InterPro:GH10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF |
| InterPro:IPR001000 | InterPro:IPR008979 | EntrezGene:LOC100248080 | wikigene:LOC100248080 | PFAM:PF00331 | PFAM:PF02018 |
| PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF2 | SMART:SM00633 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| UniParc:UPI0002109579 | ArrayExpress:VIT_03s0091g00880 | EnsemblPlantsGene:VIT_03s0091g00880 | EnsemblPlants:VIT_03s0091g00880.t01 | RefSeq:XP_002264556 | RefSeq:XP_002264556.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:7374686..7382483
Molecular Weight (calculated)
66106.8 Da
IEP (calculated)
6.735
GRAVY (calculated)
-0.334
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGPDLVC QLDNVQALLF LRSQLLSVED LENGIYISFF GLANDALSYD YTASLECLEK PHKPQYGGGI ILNPELNHGL KGWSAFGGAE MENRASGGNT
101: FIVAHSRKQM NDSISQKLHL HKDKLYTFSA WIQVSSGNTP VTAVFRTNSG PQYAGAVFAE SGCWSMLKGG LTVDSSGPAE LYFESEDTSV EIWVDSISLQ
201: PFTQEQWTSH QDQSIEKTRK RKVRLQATDA HGNPIAGAKM AIKQNKLNFP FGSAISKYIL SNTAYQNWFT SRFTVTVFEN ELKWYSTEWS RGKEDYSVPD
301: AMLRFAKQHG LAVRGHNILW DNGNNQPSWV PSLSNSELQA AVDKRINSVV RRYSGQFIGW DVVNENLHFS FFESRLGAKA TGVAFQKTRQ LDGRTTLFMN
401: EYDTIEKSGK GSASPDKYLQ KLREIQSFLR GGGNLGIGLE GHFRTPNIPY MRSAIDKLAA AKFPIWITEL DVDPSQPMHL DQVLREAHAH PAIHGIVMWA
501: AWKPEGCFRM CLTDSNFKNT PTGDVVDKLL QQWTHAGLVG TTDADGFFET SLFHGDYEVA ITHPTVTNSS LIHSFKVASS TDISPESALL VKVSA
101: FIVAHSRKQM NDSISQKLHL HKDKLYTFSA WIQVSSGNTP VTAVFRTNSG PQYAGAVFAE SGCWSMLKGG LTVDSSGPAE LYFESEDTSV EIWVDSISLQ
201: PFTQEQWTSH QDQSIEKTRK RKVRLQATDA HGNPIAGAKM AIKQNKLNFP FGSAISKYIL SNTAYQNWFT SRFTVTVFEN ELKWYSTEWS RGKEDYSVPD
301: AMLRFAKQHG LAVRGHNILW DNGNNQPSWV PSLSNSELQA AVDKRINSVV RRYSGQFIGW DVVNENLHFS FFESRLGAKA TGVAFQKTRQ LDGRTTLFMN
401: EYDTIEKSGK GSASPDKYLQ KLREIQSFLR GGGNLGIGLE GHFRTPNIPY MRSAIDKLAA AKFPIWITEL DVDPSQPMHL DQVLREAHAH PAIHGIVMWA
501: AWKPEGCFRM CLTDSNFKNT PTGDVVDKLL QQWTHAGLVG TTDADGFFET SLFHGDYEVA ITHPTVTNSS LIHSFKVASS TDISPESALL VKVSA
001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV
Arabidopsis Description
Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]
SUBAcon: [plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.