Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 4
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS3A01G099400.1 | |
TraesCS3B01G115800.1 | |
TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G33840.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
AT4G33840.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
AT4G33840.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G259100.1 | Wheat | vacuole | 96.05 | 96.05 |
TraesCS4B01G259400.1 | Wheat | vacuole | 95.2 | 95.2 |
HORVU4Hr1G070260.12 | Barley | vacuole | 91.6 | 87.4 |
Os03t0201901-00 | Rice | cytosol | 74.44 | 76.14 |
Zm00001d028103_P001 | Maize | extracellular, vacuole | 73.07 | 73.45 |
EER92683 | Sorghum | vacuole | 72.38 | 72.26 |
Zm00001d048151_P001 | Maize | vacuole | 70.33 | 70.57 |
TraesCS4A01G045500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 63.64 | 64.63 |
GSMUA_Achr1P12500_001 | Banana | extracellular, vacuole | 51.29 | 52.55 |
VIT_03s0091g00950.t01 | Wine grape | cytosol | 48.89 | 51.63 |
TraesCS1A01G107100.1 | Wheat | extracellular, vacuole | 50.77 | 51.57 |
VIT_03s0091g00900.t01 | Wine grape | cytosol | 48.89 | 51.17 |
TraesCS5A01G196600.1 | Wheat | plasma membrane, vacuole | 51.11 | 50.77 |
TraesCS5A01G196500.1 | Wheat | plasma membrane, vacuole | 51.11 | 50.77 |
KRH29254 | Soybean | cytosol | 48.89 | 50.35 |
AT4G33830.1 | Thale cress | vacuole | 49.06 | 49.65 |
CDY28323 | Canola | vacuole | 47.34 | 49.55 |
AT4G33840.1 | Thale cress | vacuole | 48.89 | 49.48 |
AT4G33860.1 | Thale cress | plasma membrane, vacuole | 48.54 | 49.13 |
CDY48434 | Canola | vacuole | 48.2 | 49.04 |
TraesCS2A01G584800.1 | Wheat | plastid, vacuole | 51.11 | 48.93 |
CDY28324 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.03 | 48.87 |
CDY69164 | Canola | vacuole | 47.86 | 48.69 |
Bra034584.1-P | Field mustard | vacuole | 47.68 | 48.52 |
Bra034585.1-P | Field mustard | vacuole | 47.68 | 48.52 |
VIT_03s0091g00890.t01 | Wine grape | extracellular, vacuole | 45.8 | 48.46 |
VIT_03s0091g00880.t01 | Wine grape | vacuole | 49.4 | 48.4 |
CDY49378 | Canola | plasma membrane, vacuole | 47.0 | 47.9 |
Bra034586.1-P | Field mustard | endoplasmic reticulum, vacuole | 46.83 | 47.56 |
CDY48433 | Canola | vacuole | 47.0 | 47.32 |
CDY28325 | Canola | vacuole | 46.83 | 47.15 |
KRH29253 | Soybean | extracellular, vacuole | 45.11 | 46.47 |
Solyc01g106990.1.1 | Tomato | vacuole | 43.05 | 43.5 |
Solyc01g107000.1.1 | Tomato | endoplasmic reticulum | 42.37 | 42.22 |
Bra017609.1-P | Field mustard | nucleus | 47.68 | 41.68 |
PGSC0003DMT400037865 | Potato | cytosol | 39.79 | 40.85 |
Solyc05g051260.2.1 | Tomato | golgi, vacuole | 39.28 | 39.69 |
TraesCS2A01G061600.1 | Wheat | extracellular, plasma membrane, vacuole | 36.54 | 38.31 |
TraesCS4A01G071100.2 | Wheat | vacuole | 36.71 | 38.15 |
CDX72434 | Canola | cytosol, vacuole | 48.89 | 32.5 |
GSMUA_Achr1P12520_001 | Banana | mitochondrion | 47.17 | 30.02 |
TraesCS5A01G441700.1 | Wheat | cytosol | 27.79 | 29.62 |
TraesCS5A01G441600.1 | Wheat | cytosol | 27.27 | 28.96 |
TraesCS3A01G038200.1 | Wheat | cytosol | 27.96 | 28.7 |
TraesCS5A01G441400.1 | Wheat | cytosol | 26.59 | 27.98 |
GSMUA_Achr1P12510_001 | Banana | cytosol | 44.94 | 27.35 |
TraesCS3A01G038000.1 | Wheat | cytosol | 26.76 | 25.32 |
Solyc01g106980.1.1 | Tomato | cytosol | 42.2 | 22.28 |
TraesCS4A01G292300.1 | Wheat | cytosol | 27.79 | 21.98 |
TraesCS2A01G122200.1 | Wheat | mitochondrion | 28.47 | 15.09 |
Protein Annotations
Gene3D:2.60.120.260 | Gene3D:3.20.20.80 | MapMan:35.1 | InterPro:CenC_carb-bd | InterPro:GH10 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
GO:GO:0016798 | InterPro:Galactose-bd-like_sf | InterPro:Glycoside_hydrolase_SF | InterPro:IPR001000 | InterPro:IPR008979 | PFAM:PF00331 |
PFAM:PF02018 | PFscan:PS51760 | PANTHER:PTHR31490 | PANTHER:PTHR31490:SF13 | SMART:SM00633 | SUPFAM:SSF49785 |
SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G045800 | EnsemblPlants:TraesCS4A01G045800.1 | SEG:seg |
Description
No Description!
Coordinates
chr4A:-:37784011..37788205
Molecular Weight (calculated)
63823.8 Da
IEP (calculated)
6.312
GRAVY (calculated)
-0.224
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASMGRSPS SPVLSLVWAA AALLLNAALM VQSVPYDYSS SSECLAEPLE AHYGGGVIVN SDFSAGLQDW SAFGYGSVAE GASPTGNKYA VAANRTRPYQ
101: SVSQKVYLQN DTHYTLSAWL QVSDRSADVI AVVKTADDFI HAGGVDAKSG CWSILKGGLT AAASGPAELY FESNSTVDVW VDNVSLQPFS KEEWSSHRHA
201: AVKKARKRTV RLRARDAAGN PVPGARVHVR QVRSAFPLGS AMSKEIITNV KYQEWFAKRF TVTTFENEMK WYSTEWTQGH EDYTVPDLML RFARSHGIAV
301: RGHNVFWDDP RTQLGWVKAL SCDQLRAAAA NRMRSVMSRY AGQVIAWDVV NENLHFDFFE EKFGAGASAA FYQKAHGMDG GALMSMNDFN TLEQPTDPNG
401: LPSKYLNKLS QIKDAFPGNG IGVRMAIGLE GHFGATPSIP YVRAALDTLS QAGVPIWVTE VDVKAGPDQA YHLEQVLREV YSHPAVHGIV LWTAWHPTGC
501: YVMCLTDDNF NNLPVGDTVD KLIAEWKTTS HVGVADADGH YDAELFHGDY QVTVTHPAAA ANSTVVQSLS VDRESDNEYT IHV
101: SVSQKVYLQN DTHYTLSAWL QVSDRSADVI AVVKTADDFI HAGGVDAKSG CWSILKGGLT AAASGPAELY FESNSTVDVW VDNVSLQPFS KEEWSSHRHA
201: AVKKARKRTV RLRARDAAGN PVPGARVHVR QVRSAFPLGS AMSKEIITNV KYQEWFAKRF TVTTFENEMK WYSTEWTQGH EDYTVPDLML RFARSHGIAV
301: RGHNVFWDDP RTQLGWVKAL SCDQLRAAAA NRMRSVMSRY AGQVIAWDVV NENLHFDFFE EKFGAGASAA FYQKAHGMDG GALMSMNDFN TLEQPTDPNG
401: LPSKYLNKLS QIKDAFPGNG IGVRMAIGLE GHFGATPSIP YVRAALDTLS QAGVPIWVTE VDVKAGPDQA YHLEQVLREV YSHPAVHGIV LWTAWHPTGC
501: YVMCLTDDNF NNLPVGDTVD KLIAEWKTTS HVGVADADGH YDAELFHGDY QVTVTHPAAA ANSTVVQSLS VDRESDNEYT IHV
001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV
Arabidopsis Description
Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]
SUBAcon: [plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.