CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular, peroxisome, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33840.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0201800-01	Rice	extracellular	64.51	63.4
KXG34533	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	53.32	50.66
KXG39936	Sorghum	extracellular, vacuole	47.38	46.97
KRH29254	Soybean	cytosol	44.76	45.23
EER92683	Sorghum	vacuole	45.45	44.52
CDY28323	Canola	vacuole	41.43	42.55
Bra034585.1-P	Field mustard	vacuole	42.13	42.06
CDY69164	Canola	vacuole	42.13	42.06
KRH29253	Soybean	extracellular, vacuole	41.61	42.05
AT4G33860.1	Thale cress	plasma membrane, vacuole	42.31	42.01
CDY28324	Canola	endoplasmic reticulum, extracellular, vacuole	41.78	41.71
AT4G33840.1	Thale cress	vacuole	41.96	41.67
AT4G33830.1	Thale cress	vacuole	41.96	41.67
VIT_03s0091g00890.t01	Wine grape	extracellular, vacuole	39.51	41.02
Bra034586.1-P	Field mustard	endoplasmic reticulum, vacuole	41.08	40.94
CDY28325	Canola	vacuole	41.43	40.93
CDY48434	Canola	vacuole	40.91	40.84
CDY48433	Canola	vacuole	41.26	40.76
Bra034584.1-P	Field mustard	vacuole	40.56	40.49
VIT_03s0091g00900.t01	Wine grape	cytosol	38.99	40.04
CDY49378	Canola	plasma membrane, vacuole	40.03	40.03
GSMUA_Achr1P12500_001	Banana	extracellular, vacuole	39.51	39.72
VIT_03s0091g00880.t01	Wine grape	vacuole	40.73	39.16
VIT_03s0091g00950.t01	Wine grape	cytosol	37.59	38.95
Solyc01g107000.1.1	Tomato	endoplasmic reticulum	39.69	38.8
Solyc01g106990.1.1	Tomato	vacuole	37.76	37.44
EER95184	Sorghum	vacuole	35.14	35.89
Bra017609.1-P	Field mustard	nucleus	41.43	35.53
PGSC0003DMT400037865	Potato	cytosol	34.27	34.51
EES10525	Sorghum	plasma membrane, vacuole	34.62	34.49
Solyc05g051260.2.1	Tomato	golgi, vacuole	34.79	34.49
CDX72434	Canola	cytosol, vacuole	40.73	26.57
GSMUA_Achr1P12520_001	Banana	mitochondrion	38.46	24.02
EES00362	Sorghum	cytosol	24.13	23.23
GSMUA_Achr1P12510_001	Banana	cytosol	38.64	23.07
EES00361	Sorghum	cytosol	22.38	22.7
EER93683	Sorghum	cytosol	27.27	20.86
KXG30265	Sorghum	plastid	23.25	20.78
Solyc01g106980.1.1	Tomato	cytosol	36.01	18.66
EER96324	Sorghum	mitochondrion	25.52	13.3

Protein Annotations

Gene3D:3.20.20.80	MapMan:35.1	EntrezGene:8081873	UniProt:C5WTT5	EnsemblPlants:EER92684	ProteinID:EER92684
ProteinID:EER92684.1	InterPro:GH10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	PFAM:PF00331
PFscan:PS51760	PANTHER:PTHR31490	PANTHER:PTHR31490:SF10	MetaCyc:PWY-6784	SMART:SM00633	EnsemblPlantsGene:SORBI_3001G466100
SUPFAM:SSF51445	unigene:Sbi.20782	SignalP:SignalP-noTM	UniParc:UPI0001A828E8	RefSeq:XP_002465686.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:73973978..73977205

Molecular Weight (calculated)

63692.2 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.323

Length

572 amino acids

Sequence
(BLAST)

001: MVSTGKLVFI VLIVLFEGSL VTSKKGYSSE QPTKTTGGYS PKETSEKADV SSTKSSGTVP YDYSANIECI KEPEKPLYGG GIISAADSSG KKCPIKGSVL
101: KVDLKKDYHY ALSVWLKFSK GTGDITAIIV TPDGKFNTAG AIVAKSECWT LLKGGATSYA EGKSDLFFES NSTAEIMAES IALQGFSFEE WNAHREEVVA
201: KERKKKVKIT VESGGKPLPD AELSVVWVAK GFPLGNAMTK EILDMPEYEE WFTKRFKWAT MENAMKWYST EYNEGEEGFV VADKMLALAE KHNISVRGHN
301: VFWDDQSHQM PWVSKLSVDK LRAAVAKHLK SVVSRYAGKV IHWDVVNENL HFSFFEEKLG KDASGEIFKE VAKLDPKPIL FMNEFNTIEQ PCDKAPLPTK
401: YLAKLRQIQS YPGNEDLKYG IGLESHFAKP NIPYMRGSLD TLAAAKVPIW LTEVDVTKGP KQVEFLEEVM REGFGHPGVK GIVMWAAWHA KGCYVMCLTD
501: NNFKNLPQGD LVDRLLDEWR KVPEKPMTDS NGVFEAELFH GEYQVTVKHA SLKEPIVQTV DLDTKSEAAI KA

Best Arabidopsis Sequence Match ( AT4G33860.1 )
(BLAST)

001: MKRLLLLVVL CSLSLSRCES KVVPYDYSAT IECLEIPLKP QYNGGIIVSP DVRDGTLGWT PFGNAKVDFR KIGNHNFFVA RDRKQPFDSV SQKVYLEKGL
101: LYTFSAWLQV SKGKAPVKAV FKKNGEYKLA GSVVAESKCW SMLKGGLTVD ESGPAELYFE SEDTTVEIWV DSVSLQPFTQ EEWNSHHEQS IQKERKRTVR
201: IRAVNSKGEP IPKATISIEQ RKLGFPFGCE VEKNILGNKA YQNWFTQRFT VTTFANEMKW YSTEVVRGKE DYSTADAMLR FFKQHGVAVR GHNILWNDPK
301: YQPKWVNALS GNDLYNAVKR RVFSVVSRYK GQLAGWDVVN ENLHFSYFED KMGPKASYNI FKMAQAFDPT TTMFMNEYNT LEESSDSDSS LARYLQKLRE
401: IRSIRVCGNI SLGIGLESHF KTPNIPYMRS ALDTLAATGL PIWLTEVDVE APPNVQAKYF EQVLREGHAH PQVKGIVTWS GYSPSGCYRM CLTDGNFKNV
501: PTGDVVDKLL HEWGGFRRQT TGVTDADGYF EASLFHGDYD LKIAHPLTNS KASHSFKLTS DVSSSQNQPS SFVFRV

Arabidopsis Description

Glycosyl hydrolase family 10 protein [Source:UniProtKB/TrEMBL;Acc:F4JJU9]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.