Factsheet for Os03t0672900-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93683	Sorghum	cytosol	81.22	82.09
Zm00001d013561_P001	Maize	extracellular	80.56	81.42
TraesCS4D01G019500.1	Wheat	cytosol	77.51	80.61
TraesCS4A01G292300.1	Wheat	cytosol	78.44	80.46
TraesCS4B01G021800.1	Wheat	cytosol	77.12	80.19
HORVU4Hr1G003220.3	Barley	cytosol	78.17	80.08
Os05t0319900-00	Rice	cytosol, mitochondrion, plastid, vacuole	18.12	61.16
Os01t0134800-01	Rice	extracellular, mitochondrion, vacuole	25.79	52.99
Os01t0134900-01	Rice	extracellular	37.96	51.53
Os03t0243700-01	Rice	cytosol	20.9	39.11
Os07t0456700-01	Rice	plasma membrane	51.45	35.33
Os05t0304900-01	Rice	extracellular, vacuole	20.63	31.58
Os03t0201901-00	Rice	cytosol	22.22	29.47
Os03t0201500-01	Rice	vacuole	22.35	29.44
Os10t0351700-01	Rice	plasma membrane	21.43	27.88
Os10t0351600-00	Rice	cytosol	19.71	25.38
Os03t0201800-01	Rice	extracellular	19.18	24.91

Protein Annotations

Gene3D:2.60.120.260	MapMan:21.2.2.2.4	Gene3D:3.20.20.80	EntrezGene:4333697	ProteinID:AAP03380.1	ProteinID:AAR87197.1
ProteinID:ABF98138.1	ProteinID:BAF12790.1	ProteinID:BAS85698.1	InterPro:CenC_carb-bd	ncoils:Coil	ProteinID:EAZ28099.1
InterPro:GH10	InterPro:GH10_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0045493	InterPro:Galactose-bd-like_sf	InterPro:Glycoside_hydrolase_SF	InterPro:IPR001000	InterPro:IPR008979	EnsemblPlantsGene:Os03g0672900
EnsemblPlants:Os03t0672900-00	PFAM:PF00331	PFAM:PF02018	PRINTS:PR00134	ScanProsite:PS00591	PFscan:PS51760
PANTHER:PTHR31490	PANTHER:PTHR31490:SF15	UniProt:Q84R74	SMART:SM00633	SUPFAM:SSF49785	SUPFAM:SSF51445
UniParc:UPI000018CD5C	RefSeq:XP_015629989.1	SEG:seg	:	:	:

Description

Glycoside hydrolase, family 10 domain containing protein. (Os03t0672900-00)

Coordinates

chr3:+:26576580..26579053

Molecular Weight (calculated)

81559.2 Da

IEP (calculated)

5.239

GRAVY (calculated)

-0.192

Length

756 amino acids

Sequence
(BLAST)

001: MAIGGDAGQV VGDGGAGAGD DNIILNPEFD SGLDNWSGSG CKIELHDSLD DGKVLAVSGK YFVAATGRTD TWNGVQQDVT SRLQRKLLYE VAATVRLSGA
101: AATPSPCEVR ATVAVQNTDG RQQYISVAKS PAVSDKEWVQ LQGKFLLNGT VAKAAIYIEG PPAGVDLLLD SLVVKHAQKA TPAPAPDFKN LEYGANILQN
201: SDLDDGVNGW FGLGSCALSV HGGAPRVLPP MARQSLSPLD GDDGDGDEPL NGKHIHVTNR AQTWMGPAQV ITDRVTPYAT YQVSAWVRVG GQQAAGKPQN
301: INVAVAVDSQ WLNGGQVMAL DERWYEIGGS FRVESSSTPP SRVMLYVQGP DPGVDLMVAG LRVFPVDRKA RAKHLRKLTD KVRKRDVVVK VTAAAGGAAA
401: ADGVEVRVRQ VSNSFPLGAC IMRTNMDNED YVDFFTKHFN WAVFGNELKW YWTEPEKGQL NYADADDLLK LCADHGMCVR GHCIFWEVDS AVQQWVKALP
501: ADELSAAVAS RINGLLTRYK GKFRHYDVNN EMLHGSFYQD KLGAGARAAM FRAASELDPD ALLFVNDYNV EGACVDVRAT PEAYIAQVTG LQEQGAAVGG
601: VGLQGHVTAP VGAVVRAALD RLAVLGLPLW FTELDVSSAN EHVRADDLEA MLREAYAHPA VDGVVLWGFW ELSMSRDDAH LVDAEGEVNE AGRRLLQLKR
701: EWLTRAHGRA DGNGEFRFRG HHGAYHVDVV TPAGAKISQE FTVDKDDAPL VLNITV

Best Arabidopsis Sequence Match ( AT1G58370.2 )
(BLAST)

001: MKRFTVCCFS NKIHKNGDRN PDKKSRESME VSRKDNEEPE KQNNNNVASI IGSDRTNVIV NHDFSSGMHS WHPNCCEAFV VTAESNVSHG VLDPSKCGSY
101: VVVKNRKETW QGLEQDITNR VKPCSLYKVS ATVAVSGPVH GLVEVMATLK LESQQSQTNY QFIAKTCVFK EKWVRLEGMF SLPSLPEKVV FYLEGPSPGI
201: DLLIQSVTIH RESEPELERV TAEDETIVVN PNFEDGLNNW SGRSCKIVLH DSMADGKIVP ESGKVFASAT ERTQNWNGIQ QEITGKVQRK RVYEATAVVR
301: IYGNNVTTAT VQATLWVQNP NQRDQYIGIS TVQATDKEWI HLKGKFLLNG SASRVVIYIE GPPPGTDILL NSLTVKHAEK IPPSPPPSIE NPAFGVNILT
401: NSHLSDDTTN GWFSLGNCTL SVAEGSPRIL PPMARDSLGA HERLSGRYIL VTNRTQTWMG PAQMITDKLK LFLTYQISVW VKVGSGINSP QNVNVALGID
501: SQWVNGGQVE INDDRWHEIG GSFRIEKNPS KALVYVQGPS SGIDLMVAGL QIFPVDRLAR IKHLKRQCDK IRKRDVILKF AGVDSSKFSG ASVRVRQIRN
601: SFPVGTCISR SNIDNEDFVD FFLKNFNWAV FANELKWYWT EPEQGKLNYQ DADDMLNLCS SNNIETRGHC IFWEVQATVQ QWIQNMNQTD LNNAVQNRLT
701: DLLNRYKGKF KHYDVNNEML HGSFYQDKLG KDIRVNMFKT AHQLDPSATL FVNDYHIEDG CDPKSCPEKY TEQILDLQEK GAPVGGIGIQ GHIDSPVGPI
801: VCSALDKLGI LGLPIWFTEL DVSSVNEHIR ADDLEVMMWE AFGHPAVEGI MLWGFWELFM SRDNSHLVNA EGDVNEAGKR FLAVKKDWLS HANGHIDQNG
901: AFPFRGYSGN YAVEVITTSS SKVLKTFGVD KEDSSQVITV DLQGL

Arabidopsis Description

RXF12glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Source:TAIR;Acc:AT1G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.