Factsheet for PGSC0003DMT400028915

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005390.2.1	Tomato	cytosol, extracellular, nucleus, plastid	99.6	99.6
VIT_11s0037g00070.t01	Wine grape	cytosol	93.95	93.95
KRH03077	Soybean	cytosol, nucleus	93.75	93.56
KRH72280	Soybean	cytosol, nucleus	92.94	92.76
TraesCS2A01G190700.1	Wheat	cytosol	91.33	91.33
EES13911	Sorghum	cytosol	91.53	91.16
Bra032110.1-P	Field mustard	cytosol	91.13	91.13
TraesCS2B01G216400.1	Wheat	cytosol	91.13	91.13
HORVU2Hr1G036110.7	Barley	cytosol	91.13	91.13
TraesCS2D01G197300.1	Wheat	golgi	90.93	90.93
GSMUA_Achr7P19330_001	Banana	cytosol	90.93	90.74
Bra007862.1-P	Field mustard	cytosol	90.32	90.32
GSMUA_Achr6P01980_001	Banana	cytosol	90.12	90.12
Os08t0440800-01	Rice	extracellular, plasma membrane	90.52	89.98
CDY20292	Canola	cytosol	90.93	89.66
CDY34779	Canola	peroxisome	90.52	89.26
Zm00001d050428_P003	Maize	cytosol	90.73	88.93
CDY46134	Canola	peroxisome	56.25	87.19
CDY55249	Canola	cytosol	76.41	86.33
AT2G24270.2	Thale cress	cytosol	90.32	83.58
PGSC0003DMT400010556	Potato	plastid	14.52	30.0
PGSC0003DMT400083025	Potato	cytosol	29.44	28.97
PGSC0003DMT400000852	Potato	cytosol	28.83	28.6
PGSC0003DMT400062930	Potato	cytosol	30.65	28.41
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	28.23	27.72
PGSC0003DMT400010555	Potato	mitochondrion	29.03	27.22
PGSC0003DMT400044163	Potato	plastid	27.22	26.32
PGSC0003DMT400037582	Potato	mitochondrion	29.84	24.92
PGSC0003DMT400027691	Potato	mitochondrion	25.2	23.28
PGSC0003DMT400011970	Potato	endoplasmic reticulum, extracellular, vacuole	26.21	21.92
PGSC0003DMT400058895	Potato	cytosol	21.98	21.41

Protein Annotations

MapMan:2.1.1.4.2	Gene3D:3.40.309.10	Gene3D:3.40.605.10	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
UniProt:M1ARW1	PFAM:PF00171	EnsemblPlantsGene:PGSC0003DMG400011132	PGSC:PGSC0003DMG400011132	EnsemblPlants:PGSC0003DMT400028915	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR42991	PANTHER:PTHR42991:SF3	SUPFAM:SSF53720	UniParc:UPI000296AA22	:

Description

NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400011132]

Coordinates

chr7:+:583375..589095

Molecular Weight (calculated)

53134.5 Da

IEP (calculated)

7.167

GRAVY (calculated)

0.029

Length

496 amino acids

Sequence
(BLAST)

001: MAGNGVFAEI IDGEVYKYYC EGEWRKSASG KSVAIINPTT RKTQYKVQAC TQEEVNKVME IAKAAQKSWA KTPLWKRAEL LHKAAAILKE HKAPIAECLV
101: KEIAKPAKDA VTEVVRSGDL VSYTAEEGVR ILGEGKFLVS DSFPGNERTK YCLTSKIPLG VILAIPPFNY PVNLAVSKIA PALIAGNSLV LKPPTQGAVA
201: ALHMVHCFHL AGFPKGLISC VTGKGSEIGD FLTMHPGVNC ISFTGGDTGV AISKKAGMVP LQMELGGKDA CIVLEDADLD LAAGNIVKGG FSYSGQRCTA
301: VKVVLVMESV ADTLVEKVNA KVAKLTVGPP EDNCDITPVV SESSANFIEG LVMDAKEKDA TFCQPYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVLPVI
401: RINSVEEGIH HCNASNFGLQ GCVFTKDINK AILISDAMET GTVQINSAPA RGPDHFPFQG IKDSGIGSQG ITNSINMMTK VKTTVINLPT PSYTMG

Best Arabidopsis Sequence Match ( AT2G24270.2 )
(BLAST)

001: MLFHHSFHKN LSIITSSLSL SLLYNTQEAR HRGEILFQRS MAGTGLFAEI LDGEVYKYYA DGEWKTSSSG KSVAIMNPAT RKTQYKVQAC TQEEVNAVME
101: LAKSAQKSWA KTPLWKRAEL LHKAAAILKD NKAPMAESLV KEIAKPAKDS VTEVVRSGDL ISYCAEEGVR ILGEGKFLLS DSFPGNDRTK YCLTSKIPLG
201: VVLAIPPFNY PVNLAVSKIA PALIAGNSLV LKPPTQGAVS CLHMVHCFHL AGFPKGLISC ITGKGSEIGD FLTMHPAVNC ISFTGGDTGI SISKKAGMIP
301: LQMELGGKDA CIVLDDADLD LVASNIIKGG FSYSGQRCTA VKVVLVMESV ADELVEKVKA KVAKLTVGPP EENSDITAVV SESSANFIEG LVMDAKEKGA
401: TFCQEYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVVPVL RINSVEEGIN HCNASNFGLQ GCVFTKDINK AILISDAMET GTVQINSAPA RGPDHFPFQG
501: LKDSGIGSQG VTNSINLMTK VKTTVINLPT PSYSMG

Arabidopsis Description

ALDH11A3aldehyde dehydrogenase 11A3 [Source:TAIR;Acc:AT2G24270]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.