Factsheet for PGSC0003DMT400044163

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090700.1.1	Tomato	plastid	98.64	96.93
VIT_19s0085g00880.t01	Wine grape	plastid	81.09	78.49
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	54.58	78.43
KRH13776	Soybean	mitochondrion	79.53	75.98
KRH43670	Soybean	mitochondrion	78.95	75.42
AT1G79440.1	Thale cress	mitochondrion	75.05	72.92
KXG29578	Sorghum	mitochondrion	73.68	71.73
Bra035119.1-P	Field mustard	mitochondrion	73.88	71.51
Zm00001d053776_P015	Maize	mitochondrion	72.9	70.97
TraesCS6A01G155500.1	Wheat	mitochondrion	72.71	70.91
TraesCS6B01G183600.3	Wheat	mitochondrion	72.51	70.72
TraesCS6D01G145400.4	Wheat	mitochondrion	73.49	69.69
VIT_19s0085g00870.t01	Wine grape	cytosol	66.28	68.97
CDX88542	Canola	mitochondrion	74.27	68.9
CDX87380	Canola	mitochondrion	73.88	68.66
Os02t0173900-01	Rice	mitochondrion	39.96	66.13
HORVU6Hr1G031480.15	Barley	mitochondrion	69.79	64.5
PGSC0003DMT400083025	Potato	cytosol	36.84	37.5
PGSC0003DMT400062930	Potato	cytosol	37.82	36.26
PGSC0003DMT400000852	Potato	cytosol	35.09	36.0
PGSC0003DMT400010556	Potato	plastid	16.57	35.42
PGSC0003DMT400010555	Potato	mitochondrion	36.06	34.97
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	34.11	34.65
PGSC0003DMT400037582	Potato	mitochondrion	37.82	32.66
PGSC0003DMT400058895	Potato	cytosol	28.46	28.68
PGSC0003DMT400028915	Potato	cytosol	26.32	27.22
PGSC0003DMT400027691	Potato	mitochondrion	28.07	26.82
PGSC0003DMT400011970	Potato	endoplasmic reticulum, extracellular, vacuole	27.68	23.95

Protein Annotations

EntrezGene:102597977	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_NAD(P)	InterPro:Aldehyde_DH_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004030	GO:GO:0006081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009013
GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
InterPro:IPR016162	InterPro:IPR016163	UniProt:M1BFP9	PFAM:PF00171	EnsemblPlantsGene:PGSC0003DMG400017144	PGSC:PGSC0003DMG400017144
EnsemblPlants:PGSC0003DMT400044163	PIRSF:PIRSF036492	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5
SUPFAM:SSF53720	InterPro:Succ_semiAld_DH	TIGRFAMs:TIGR01780	UniParc:UPI000294E69D	SEG:seg	:

Description

Succinic semialdehyde dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400017144]

Coordinates

chr9:-:57005229..57007827

Molecular Weight (calculated)

54469.1 Da

IEP (calculated)

7.309

GRAVY (calculated)

0.079

Length

513 amino acids

Sequence
(BLAST)

001: MALSACAMLH RSSISGPVRL MTTATQSIAA KLSSSGLLRS QALIGGKWVD AYDGKTIKVH NPATGEVITD VPCMGGRETN DAISSAYDAF SSWSKLTAAE
101: RSKYLRKWYD LIMAHKEELG QLMTLEQGKP LKEAIGEVSY GAGFIEFSAE EGKRIYGDII PSPLADRRLF VLKQPVGVVG AITPWNFPLA MITRKVGPAL
201: ACGCTVVIKP SELTPLTALA AAELSIQAGI PPGVVNVVMG NAPAIGDALL ASPQVRKITF TGSTKVGKKL MEGAAATVKK VSLELGGNAP CIIFDDADLE
301: VALKGALATK FRNTGQTCVC ANRILVQEGI YDKFANAFAK AVQNMKVGDG FTEGVEQGPL INEAAVQKVE SFVEEATSKG AKVLVGGKRH SLGMTFYEPT
401: VVTGVNSEML LAKEEVFGPV APLLKFKTDE EAIQMANDTN AGLAAYIFST NIKRAWRVTE ALEYGIVGVN EGLVSTEVAP FGGVKQSGLG REGSKYGMDE
501: YLEMKYVCLG SMS

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.