Factsheet for VIT_19s0085g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	50.1	69.19
VIT_19s0085g00880.t01	Wine grape	plastid	72.21	67.17
PGSC0003DMT400044163	Potato	plastid	68.97	66.28
Solyc09g090700.1.1	Tomato	plastid	69.17	65.33
VIT_19s0085g00860.t01	Wine grape	cytosol, mitochondrion, peroxisome	63.08	64.79
KRH13776	Soybean	mitochondrion	70.18	64.43
KRH43670	Soybean	mitochondrion	69.17	63.5
KXG29578	Sorghum	mitochondrion	67.75	63.38
TraesCS6A01G155500.1	Wheat	mitochondrion	66.73	62.55
TraesCS6B01G183600.3	Wheat	mitochondrion	66.73	62.55
Zm00001d053776_P015	Maize	mitochondrion	66.53	62.24
TraesCS6D01G145400.4	Wheat	mitochondrion	67.55	61.55
HORVU6Hr1G031480.15	Barley	mitochondrion	63.69	56.58
Os02t0173900-01	Rice	mitochondrion	35.5	56.45
VIT_14s0066g02410.t01	Wine grape	cytosol, peroxisome, plastid	35.09	34.74
VIT_17s0000g07650.t01	Wine grape	peroxisome	35.29	34.59
VIT_17s0000g07660.t01	Wine grape	cytosol	16.02	31.73
VIT_17s0000g08070.t01	Wine grape	mitochondrion	34.48	31.6
VIT_14s0066g01550.t01	Wine grape	mitochondrion	34.28	31.59
VIT_01s0137g00080.t01	Wine grape	cytosol	25.15	31.31
VIT_01s0026g00220.t01	Wine grape	mitochondrion	34.28	31.01
VIT_11s0037g00070.t01	Wine grape	cytosol	25.36	25.2
VIT_04s0008g05810.t01	Wine grape	cytosol	24.95	24.8
VIT_11s0016g00900.t01	Wine grape	cytosol	25.36	24.61
VIT_01s0026g00210.t01	Wine grape	cytosol	29.21	24.53
VIT_03s0132g00200.t01	Wine grape	mitochondrion	26.77	24.49
VIT_09s0002g01010.t01	Wine grape	cytosol	22.31	24.34
VIT_05s0077g01060.t01	Wine grape	vacuole	24.14	20.07
VIT_03s0132g00230.t01	Wine grape	cytosol	18.86	16.09
VIT_00s0218g00070.t01	Wine grape	cytosol	26.57	9.49

Protein Annotations

EntrezGene:100251993	wikigene:100251993	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	ProteinID:CBI24146	ProteinID:CBI24146.3	UniProt:D7T119
EMBL:FN595503	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004777	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006540
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491
GO:GO:0016620	GO:GO:0051287	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	EntrezGene:LOC100251993
wikigene:LOC100251993	PFAM:PF00171	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	UniParc:UPI00015CCDCC
ArrayExpress:VIT_19s0085g00870	EnsemblPlantsGene:VIT_19s0085g00870	EnsemblPlants:VIT_19s0085g00870.t01	RefSeq:XP_002265402	RefSeq:XP_002265402.1	RefSeq:XP_019073007.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:23341372..23351231

Molecular Weight (calculated)

52809.0 Da

IEP (calculated)

5.005

GRAVY (calculated)

0.159

Length

493 amino acids

Sequence
(BLAST)

001: MEAQSVITRF QNSGVFRTQG LIGGKWTEAY DGKTIQVHNP ATGEVIADVP CMGQPETNDA ISSAYEMFNS WSKVTAIERS QCLWKWHDLL IAHKEELGQL
101: ITLEQGKPLN EAIIEVIIAA GYLEFFAEEA KHVYSDIIPS TVADCQLFVI KQPVGVVGAI TPWNFPLAML TSKVGPALAC GCTVVLEPSE LTPLIAFAAA
201: GLALEAGIPS GALNVVTGNA PDIEHALLAS PKVRKITFTG LSAVEKKIMP GAGETLRKVS LEPGGNAPCI VFDDTDLGVA VKSILAVKFH NSGQTCISAN
301: RILVQEGIYE KFATAFSKAV TSLQVGDGFC EGVTQGPLIN EAAVQTVESL VQDAISKGAK LLLGGKRHNL GMTFYEPTVI GDVNNKMLIS RNKICGPIAA
401: LLRFKTEEEA ICIANDTDEG LAAYIFTKNL QRSWRVSEVL EYGLVGVSEG LIPTVMAPVS GFKNTGLGQE GSKKGMLEYL ELKYICLGNM NNI

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.