Factsheet for Os02t0173900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053776_P015	Maize	mitochondrion	89.35	52.56
KXG29578	Sorghum	mitochondrion	88.06	51.8
TraesCS6A01G155500.1	Wheat	mitochondrion	85.48	50.38
TraesCS6B01G183600.3	Wheat	mitochondrion	84.84	50.0
TraesCS6D01G145400.4	Wheat	mitochondrion	86.13	49.35
HORVU6Hr1G031480.15	Barley	mitochondrion	86.77	48.47
AT1G79440.1	Thale cress	mitochondrion	70.0	41.1
Bra035119.1-P	Field mustard	mitochondrion	68.39	40.0
PGSC0003DMT400044163	Potato	plastid	66.13	39.96
VIT_19s0085g00880.t01	Wine grape	plastid	67.42	39.43
Solyc09g090700.1.1	Tomato	plastid	66.13	39.27
KRH13776	Soybean	mitochondrion	66.77	38.55
CDX87380	Canola	mitochondrion	68.39	38.41
CDX88542	Canola	mitochondrion	68.39	38.34
KRH43670	Soybean	mitochondrion	65.81	37.99
VIT_19s0085g00870.t01	Wine grape	cytosol	56.45	35.5
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	35.48	30.81
Os06t0270900-01	Rice	mitochondrion	36.45	20.58
Os01t0591000-01	Rice	cytosol	32.58	20.12
Os02t0730000-02	Rice	mitochondrion	35.48	19.89
Os04t0464200-01	Rice	peroxisome	32.26	19.8
Os08t0424500-01	Rice	plastid	31.29	19.28
Os01t0591300-01	Rice	cytosol	30.97	18.93
Os08t0440800-01	Rice	extracellular, plasma membrane	25.16	15.63
Os07t0188800-01	Rice	mitochondrion	23.23	13.48
Os07t0689150-00	Rice	endoplasmic reticulum	8.06	13.44
Os09t0440300-01	Rice	cytosol, mitochondrion, peroxisome, plastid	21.94	13.36
Os07t0688800-01	Rice	plasma membrane	20.65	10.72

Protein Annotations

Gene3D:3.40.605.10	MapMan:50.1.2	UniProt:A0A0P0VFG7	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
ProteinID:BAS77226.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004030	GO:GO:0004777
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006081	GO:GO:0006540	GO:GO:0008150	GO:GO:0008152	GO:GO:0009013
GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620	GO:GO:0051287
GO:GO:0055114	InterPro:IPR016162	EnsemblPlantsGene:Os02g0173900	EnsemblPlants:Os02t0173900-01	PFAM:PF00171	PANTHER:PTHR43353
PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	UniParc:UPI0000DF059B	SEG:seg	:	:

Description

Similar to SSADH. (Os02t0173900-01)

Coordinates

chr2:+:4044609..4052188

Molecular Weight (calculated)

33085.7 Da

IEP (calculated)

10.391

GRAVY (calculated)

0.149

Length

310 amino acids

Sequence
(BLAST)

001: MAMAMAMRRA AALGARHILA ASSTSSSGVL LRRHMSVDAG AAMEKVRAAG LLRTQGLIGG KWVDAYDGKT IEVQNPATGE TLANVSCMGS KETSDAIASA
101: HSTFYSWSKL TANERSKALR KWHDLIISHK EELALLMTLE QGKPMKEALV EVTYGASFIE YFAEEAKRIY GDIIPPTLSD RRLLVLKQPV GVVGAVTPWN
201: FPLAMITRKV GPALACGCTV VVKPSEFTPL TALAAADLAL QAGIPAGAIN VVMGNAPEIG DALLQSTQVR KITFTGSTAV GKKLMAGSAN TVKKVFMKNL
301: QVRLSRLFRV

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.