CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87380	Canola	mitochondrion	97.83	98.01
AT1G79440.1	Thale cress	mitochondrion	88.79	92.99
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	49.73	77.03
PGSC0003DMT400044163	Potato	plastid	68.9	74.27
KRH13776	Soybean	mitochondrion	71.79	73.93
KRH43670	Soybean	mitochondrion	71.25	73.37
Solyc09g090700.1.1	Tomato	plastid	68.9	72.99
KXG29578	Sorghum	mitochondrion	69.44	72.87
Zm00001d053776_P015	Maize	mitochondrion	69.08	72.49
TraesCS6A01G155500.1	Wheat	mitochondrion	68.54	72.05
TraesCS6B01G183600.3	Wheat	mitochondrion	68.17	71.67
TraesCS6D01G145400.4	Wheat	mitochondrion	68.9	70.43
Os02t0173900-01	Rice	mitochondrion	38.34	68.39
VIT_19s0085g00860.t01	Wine grape	cytosol, mitochondrion, peroxisome	59.13	68.12
HORVU6Hr1G031480.15	Barley	mitochondrion	65.28	65.05
CDY21806	Canola	cytosol	34.72	38.71
CDX68159	Canola	plastid	34.18	37.72
CDX93017	Canola	cytoskeleton, cytosol, peroxisome	34.18	37.72
CDY21809	Canola	mitochondrion, peroxisome	34.0	37.38
CDX94807	Canola	cytoskeleton, cytosol, peroxisome	33.82	37.33
CDX85862	Canola	cytosol, peroxisome, plastid	33.82	37.25
CDX77890	Canola	mitochondrion, peroxisome	33.82	37.18
CDY36910	Canola	mitochondrion	36.17	37.11
CDY44985	Canola	mitochondrion	35.8	36.8
CDX91724	Canola	mitochondrion	34.9	35.94
CDY57318	Canola	mitochondrion	34.72	35.75
CDY47634	Canola	mitochondrion	34.18	34.74
CDY61548	Canola	cytosol, peroxisome	34.0	33.87
CDX77883	Canola	mitochondrion	34.0	32.87
CDY61473	Canola	cytosol, peroxisome, plastid	26.76	29.37
CDY37216	Canola	mitochondrion	27.85	29.22
CDX81452	Canola	mitochondrion	27.49	28.84
CDY02483	Canola	cytosol, peroxisome, plastid	26.76	28.79
CDY51401	Canola	cytosol	11.21	28.18
CDY55249	Canola	cytosol	21.7	27.33
CDY20292	Canola	cytosol	24.23	26.64
CDY34779	Canola	peroxisome	24.23	26.64
CDY46134	Canola	peroxisome	15.37	26.56
CDY24674	Canola	vacuole	25.32	23.57
CDY05285	Canola	vacuole	25.14	23.44
CDY55250	Canola	nucleus	2.89	22.22

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	GO:A0A078DHY6	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlants:CDX88542	ProteinID:CDX88542
ProteinID:CDX88542.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00148100001	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171
ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	UniParc:UPI0004EE8DAF
SEG:seg	:	:	:	:	:

Description

BnaC06g39860D

Coordinates

chrLK031855:-:1555716..1560709

Molecular Weight (calculated)

59427.9 Da

IEP (calculated)

8.518

GRAVY (calculated)

-0.003

Length

553 amino acids

Sequence
(BLAST)

001: MVLGAAARVA SVGCRRLVCS SSHASPLLVS SSQCRQMSMD AQSVSEKLRS SGLLRTQGLI GGKWIDSYDK TTIKVNNPAT GEIVADVACM GVKETNDAIA
101: SSYEAFQSWS RRTAGERSKV LRRWIIRPVW QWRNVFHGSQ MPMKLKFDLL VAHKEELGQL ITLEQGKPLK EAIGEVAYGA SFIEYYAEEA KRVYGDIIPP
201: NSSDRRLLVL KQPIGVVGAI TPWNFPLAMI TRKVGPALAS GCTVVVKPSE LTPLTALAAA ELALQAGVPP GALNVVMGNA PEIGDALLAS PQVRKITFTG
301: STAVGKKLMA AAAPTVKKVS LELGGNAPSI IFDDADLDVA VKGTLAAKFR NSGQTCVCAN RVLVQDGIYD KFAEAFSEAV QKLEVGDGFK EGATQGPLIN
401: DAAIQKVESF VQDAVSKGAK VLLGGKKHSL GMTFYEPTVI RDVTSNMIMS KEEIFGPVAP LIRFKTEEDA IRIANDTIAG LAAYIFTNSV QRSWRVSEAL
501: EYGLVGVNEG IISTEVAPFG GVKQSGLGRE GSKYGMDEYH EIKYICMGDM NRQ

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.