Factsheet for Solyc09g090700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044163	Potato	plastid	96.93	98.64
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	53.83	78.71
VIT_19s0085g00880.t01	Wine grape	plastid	79.69	78.49
KRH13776	Soybean	mitochondrion	78.54	76.35
KRH43670	Soybean	mitochondrion	77.59	75.42
AT1G79440.1	Thale cress	mitochondrion	74.33	73.48
Bra035119.1-P	Field mustard	mitochondrion	72.99	71.89
KXG29578	Sorghum	mitochondrion	72.22	71.54
Zm00001d053776_P015	Maize	mitochondrion	71.65	70.97
TraesCS6A01G155500.1	Wheat	mitochondrion	71.46	70.91
TraesCS6B01G183600.3	Wheat	mitochondrion	71.26	70.72
TraesCS6D01G145400.4	Wheat	mitochondrion	72.22	69.69
VIT_19s0085g00870.t01	Wine grape	cytosol	65.33	69.17
CDX87380	Canola	mitochondrion	72.99	69.02
CDX88542	Canola	mitochondrion	72.99	68.9
Os02t0173900-01	Rice	mitochondrion	39.27	66.13
HORVU6Hr1G031480.15	Barley	mitochondrion	68.58	64.5
Solyc02g086970.2.1	Tomato	cytosol	35.63	39.32
Solyc06g071290.2.1	Tomato	plastid	35.63	36.9
Solyc12g007030.1.1	Tomato	cytosol	35.25	36.8
Solyc03g114150.2.1	Tomato	plastid	37.55	36.64
Solyc08g068190.2.1	Tomato	nucleus, unclear	36.4	35.58
Solyc05g005700.2.1	Tomato	mitochondrion, unclear	35.44	34.97
Solyc03g113800.2.1	Tomato	plastid	33.14	34.26
Solyc03g122310.2.1	Tomato	nucleus	28.35	27.87
Solyc07g005390.2.1	Tomato	cytosol, extracellular, nucleus, plastid	26.05	27.42
Solyc12g099290.1.1	Tomato	plastid	27.59	24.28

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	EMBL:AB359921	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	UniProt:B1Q3F8	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004777	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006540	GO:GO:0008150	GO:GO:0008152
GO:GO:0009013	GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491	GO:GO:0016620
GO:GO:0051287	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc09g090700.1	EnsemblPlants:Solyc09g090700.1.1
InterPro:Succ_semiAld_DH	TIGRFAMs:TIGR01780	UniParc:UPI0001720469	SEG:seg	:	:

Description

Succinic semialdehyde dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1Q3F8]

Coordinates

chr9:-:70143272..70144840

Molecular Weight (calculated)

55831.8 Da

IEP (calculated)

7.665

GRAVY (calculated)

0.048

Length

522 amino acids

Sequence
(BLAST)

001: MQMIRVRTRM ALSACAMLYR SSISGPVRLM TTDTQSVAAK LSSSGLLRSQ ALIGGKWVDA YDGKTIKVHN PATGEVITDV PCMGGRETND AISSAYDAFS
101: SWSKLTAAER SRYLRKWYDL IMAHKEELGQ LMTLEQGKPL KEAIGEVSYG AGFIEFSAEE GKRIYGDIIP SPLADRRLFV LKQPVGVVGA ITPWNFPLAM
201: ITRKVGPALA CGCTVVIKPS ELTPLTALAA AELSIQAGIP PGVVNVVMGN APDIGDALLA SPQVRKITFT GSTKVGKKLM EGAAATVKKV SLELGGNAPC
301: IIFDDADLEV ALKGALATKF RNTGQTCVCA NRILVQEGIY DKFANAFAKA VQNMKVGDGF TEGVEQGPLI NEAAVQKVEY FVDEATSKGA KVLVGGKRHS
401: LGMTFYEPTV VTGVNSEMLL AKEEVFGPVA PLLKFKTDEE AIQMANDTNA GLAAYIFSTN IKRAWRVTEA LEYGIVGVNE GLVSTEVAPF GGVKQSGLGR
501: EGSKYGMDEY LEMKYVCLGS MS

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.