Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • peroxisome 4
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:mitochondrion, peroxisome, plastid
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400063205 Potato cytosol, peroxisome, plastid 98.22 98.22
Solyc06g071290.2.1 Tomato plastid 79.6 79.76
KRH57015 Soybean endoplasmic reticulum 71.29 73.77
KRH54453 Soybean endoplasmic reticulum 71.49 71.77
AT1G74920.1 Thale cress cytosol, peroxisome, plastid 71.09 71.66
VIT_17s0000g07650.t01 Wine grape peroxisome 71.09 71.37
VIT_17s0000g07660.t01 Wine grape cytosol 35.05 71.08
GSMUA_Achr9P16120_001 Banana peroxisome 70.5 70.5
CDX68159 Canola plastid 69.5 70.06
Bra003781.1-P Field mustard plastid 69.31 69.86
CDX85862 Canola cytosol, peroxisome, plastid 69.31 69.72
Os08t0424500-01 Rice plastid 68.51 68.79
EES13852 Sorghum peroxisome 68.51 68.51
Zm00001d032257_P001 Maize extracellular 68.32 68.18
TraesCS2D01G326900.1 Wheat golgi, unclear 68.32 68.18
Zm00001d050339_P001 Maize extracellular 68.12 68.12
HORVU2Hr1G080970.1 Barley peroxisome 68.12 67.98
Os04t0464200-01 Rice peroxisome 67.92 67.92
Zm00001d025626_P002 Maize mitochondrion 67.72 67.59
KXG26485 Sorghum peroxisome 67.33 67.19
TraesCS6D01G355000.2 Wheat golgi 66.73 67.0
TraesCS6B01G408100.1 Wheat mitochondrion 66.73 67.0
TraesCS6A01G371100.1 Wheat golgi, nucleus, unclear 66.53 66.93
TraesCS2B01G346000.1 Wheat mitochondrion 40.59 65.92
HORVU6Hr1G087460.1 Barley plastid 66.93 64.26
TraesCS2A01G336000.1 Wheat peroxisome 68.12 63.24
Solyc12g007030.1.1 Tomato cytosol 39.41 39.8
Solyc02g086970.2.1 Tomato cytosol 37.23 39.75
Solyc08g068190.2.1 Tomato nucleus, unclear 39.41 37.27
Solyc05g005700.2.1 Tomato mitochondrion, unclear 38.42 36.67
Solyc03g114150.2.1 Tomato plastid 38.81 36.64
Solyc09g090700.1.1 Tomato plastid 34.26 33.14
Solyc07g005390.2.1 Tomato cytosol, extracellular, nucleus, plastid 27.92 28.43
Solyc03g122310.2.1 Tomato nucleus 25.35 24.11
Solyc12g099290.1.1 Tomato plastid 27.52 23.44
Protein Annotations
Gene3D:3.40.309.10Gene3D:3.40.605.10MapMan:9.4.1.2InterPro:Ald_DH/histidinol_DHInterPro:Ald_DH_CInterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLUInterPro:Ald_DH_NInterPro:Aldehyde_DH_domGO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0016620GO:GO:0019145GO:GO:0033737GO:GO:0055114
InterPro:IPR016162InterPro:IPR016163UniProt:K4BKN2PFAM:PF00171ScanProsite:PS00070ScanProsite:PS00687
PANTHER:PTHR43860PANTHER:PTHR43860:SF3SUPFAM:SSF53720EnsemblPlantsGene:Solyc03g113800.2EnsemblPlants:Solyc03g113800.2.1UniParc:UPI0002767E0A
SEG:seg:::::
Description
No Description!
Coordinates
chr3:-:63841737..63849393
Molecular Weight (calculated)
55955.4 Da
IEP (calculated)
5.106
GRAVY (calculated)
-0.116
Length
505 amino acids
Sequence
(BLAST)
001: MAIPNIRIPC RQLFIDGEWR EPLKKNRLPI INPANEEIIG YIPAATEEDV DMAVKAARSA LRRDDWGSTT GAQRAKYLRA IAAKVLEKKP ELATLETIDN
101: GKPWFEAASD IDDVVACFEY YADLAEALDS KKQTEVKLHL DSFKTHVLRE PLGVVGLITP WNYPLLMTTW KVAPALAAGC AAILKPSELA SITSLELGEI
201: CREVGLPPGA LSILTGLGHE AGSPLVSHPD VDKIAFTGSG PTGVKIMTAA AQLVKPVTLE LGGKSPIVVF DDIHNLDTAV EWTLFGCFWT NGQICSATSR
301: LIIQETIAPQ FLARLLEWTK NIKISDPLEE DCKLGPVISR GQYEKILKFI STAKDEGATI LYGGDRPEHL KKGYYIQPTI ITDVDTSMEI WKEEVFGPVL
401: CVKTFKIEEE AIELANDTKF GLGAAILSKD LERCERFTKA FQSGIVWINC SQPCFWQPPW GGKKRSGFGR ELGEWSLENY LNIKQVTQYV TPDEPWAFYK
501: SPSKL
Best Arabidopsis Sequence Match ( AT1G74920.1 )
(BLAST)
001: MAIPMPTRQL FIDGEWREPI LKKRIPIVNP ATEEVIGDIP AATTEDVDVA VNAARRALSR NKGKDWAKAP GAVRAKYLRA IAAKVNERKT DLAKLEALDC
101: GKPLDEAVWD MDDVAGCFEF YADLAEGLDA KQKAPVSLPM ESFKSYVLKQ PLGVVGLITP WNYPLLMAVW KVAPSLAAGC TAILKPSELA SVTCLELADI
201: CREVGLPPGV LNVLTGFGSE AGAPLASHPG VDKIAFTGSF ATGSKVMTAA AQLVKPVSME LGGKSPLIVF DDVDLDKAAE WALFGCFWTN GQICSATSRL
301: LVHESIASEF IEKLVKWSKN IKISDPMEEG CRLGPVVSKG QYEKILKFIS TAKSEGATIL HGGSRPEHLE KGFFIEPTII TDVTTSMQIW REEVFGPVLC
401: VKTFASEDEA IELANDSHYG LGAAVISNDT ERCDRISEAF EAGIVWINCS QPCFTQAPWG GVKRSGFGRE LGEWGLDNYL SVKQVTLYTS NDPWGWYKSP
501: N
Arabidopsis Description
ALDH10A8ALDH10A8 [Source:UniProtKB/TrEMBL;Acc:A0A178W4Y2]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.