CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54453	Soybean	endoplasmic reticulum	85.25	82.7
AT1G74920.1	Thale cress	cytosol, peroxisome, plastid	80.74	78.64
CDX85862	Canola	cytosol, peroxisome, plastid	80.74	78.49
VIT_17s0000g07650.t01	Wine grape	peroxisome	80.74	78.33
Bra003781.1-P	Field mustard	plastid	79.92	77.84
CDX68159	Canola	plastid	79.92	77.84
GSMUA_Achr9P16120_001	Banana	peroxisome	78.69	76.04
VIT_17s0000g07660.t01	Wine grape	cytosol	37.7	73.9
Zm00001d032257_P001	Maize	extracellular	75.61	72.92
EES13852	Sorghum	peroxisome	75.41	72.87
Os08t0424500-01	Rice	plastid	74.8	72.56
Zm00001d050339_P001	Maize	extracellular	75.0	72.48
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	74.18	71.68
TraesCS6A01G371100.1	Wheat	golgi, nucleus, unclear	73.57	71.51
TraesCS6B01G408100.1	Wheat	mitochondrion	73.57	71.37
Solyc03g113800.2.1	Tomato	plastid	73.77	71.29
TraesCS6D01G355000.2	Wheat	golgi	73.36	71.17
PGSC0003DMT400083025	Potato	cytosol	73.16	70.83
Os04t0464200-01	Rice	peroxisome	72.54	70.1
Zm00001d025626_P002	Maize	mitochondrion	72.13	69.57
TraesCS2B01G346000.1	Wheat	mitochondrion	44.26	69.45
Solyc06g071290.2.1	Tomato	plastid	71.72	69.44
KXG26485	Sorghum	peroxisome	71.93	69.37
TraesCS2D01G326900.1	Wheat	golgi, unclear	71.93	69.37
HORVU2Hr1G080970.1	Barley	peroxisome	71.52	68.97
HORVU6Hr1G087460.1	Barley	plastid	73.36	68.06
TraesCS2A01G336000.1	Wheat	peroxisome	71.72	64.34
KRH48414	Soybean	peroxisome	16.8	41.41
KRH41586	Soybean	nucleus	41.39	40.32
KRH60293	Soybean	nucleus	41.39	40.24
KRH39268	Soybean	nucleus	40.98	39.92
KRH48412	Soybean	nucleus	40.78	39.72
KRH41589	Soybean	nucleus	40.98	39.6
KRH03318	Soybean	mitochondrion	36.48	39.47
KRH48410	Soybean	cytosol	39.55	38.52
KRH39270	Soybean	cytosol	39.55	38.52
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	40.16	37.91
KRH60295	Soybean	mitochondrion, plastid	40.78	36.99
KRG99327	Soybean	mitochondrion	39.55	36.01
KRH74615	Soybean	mitochondrion	39.55	35.87
KRH69545	Soybean	mitochondrion	39.55	35.81
KRH45689	Soybean	nucleus	39.14	35.63
KRH43670	Soybean	mitochondrion	38.11	34.64
KRH13776	Soybean	mitochondrion	38.11	34.64
KRG93347	Soybean	peroxisome	37.3	34.47
KRH54419	Soybean	nucleus	37.91	34.26
KRH20324	Soybean	mitochondrion	37.91	34.26
KRH63505	Soybean	mitochondrion	30.12	33.11
KRH05288	Soybean	cytosol	29.71	29.23
KRH72280	Soybean	cytosol, nucleus	29.3	28.77
KRH03077	Soybean	cytosol, nucleus	29.3	28.77
KRH37502	Soybean	endoplasmic reticulum	27.87	26.72
KRH12550	Soybean	mitochondrion	27.66	26.57
KRH10621	Soybean	cytosol	27.05	25.53
KRH21731	Soybean	cytosol	15.98	25.0
KRH02344	Soybean	endoplasmic reticulum	30.12	24.66
KRH50740	Soybean	endoplasmic reticulum	29.92	24.46
KRH49851	Soybean	mitochondrion	26.84	24.39
KRH42067	Soybean	mitochondrion	26.84	24.21
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	28.28	23.63
KRH11951	Soybean	endoplasmic reticulum	28.89	23.62
KRH45519	Soybean	nucleus	25.82	12.56

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:9.4.1.2	EMBL:ACUP02002805	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C
InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_05G033500	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
UniProt:I1JZW5	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH57015	ProteinID:KRH57015	ProteinID:KRH57015.1
PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43860	PANTHER:PTHR43860:SF3	SUPFAM:SSF53720
UniParc:UPI00023BF980	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2908499..2912457

Molecular Weight (calculated)

52874.7 Da

IEP (calculated)

5.051

GRAVY (calculated)

0.038

Length

488 amino acids

Sequence
(BLAST)

001: MSIPIPHRQL FIDGDWKVPV LKNRIPIINP STQHIIGDIP AATKEDVDLA VAAAKAALSR NKGADWASAS GSVRARYLRA IAAKITEKKP ELAKLEAIDC
101: GKPLDEAAWD IDDVAGCFEF YADLAEKLDA QQKAHVSLPM DTFKSYVLKE PIGVVALITP WNYPLLMATW KVAPALAAGC AAILKPSELA SVTCLELAEI
201: CKEVGLPPGV LNILTGLGPE AGAPLAAHPD VDKIAFTGSS ATGSKIMTAA AQLIKPVSLE LGGKSPIIVF EDVDLDKAAE WTIFGCFWTN GQICSATSRL
301: IESIATEFLN RIVKWVKNIK ISDPLEEGCR LGPIVSEGQY EKILKFISNA KSEGATILTG GSRPEHLKKG FFVDQLEEVF GPVLCVKTFS TEEEAIDLAN
401: DTVYGLGSAV ISNDLERCER ITKAFKAGIV WINCSQPCFT QAPWGGIKRS GFGRELGEWG LDNYLSVKQV TQYISDEPWG WYQSPSRL

Best Arabidopsis Sequence Match ( AT1G74920.1 )
(BLAST)

001: MAIPMPTRQL FIDGEWREPI LKKRIPIVNP ATEEVIGDIP AATTEDVDVA VNAARRALSR NKGKDWAKAP GAVRAKYLRA IAAKVNERKT DLAKLEALDC
101: GKPLDEAVWD MDDVAGCFEF YADLAEGLDA KQKAPVSLPM ESFKSYVLKQ PLGVVGLITP WNYPLLMAVW KVAPSLAAGC TAILKPSELA SVTCLELADI
201: CREVGLPPGV LNVLTGFGSE AGAPLASHPG VDKIAFTGSF ATGSKVMTAA AQLVKPVSME LGGKSPLIVF DDVDLDKAAE WALFGCFWTN GQICSATSRL
301: LVHESIASEF IEKLVKWSKN IKISDPMEEG CRLGPVVSKG QYEKILKFIS TAKSEGATIL HGGSRPEHLE KGFFIEPTII TDVTTSMQIW REEVFGPVLC
401: VKTFASEDEA IELANDSHYG LGAAVISNDT ERCDRISEAF EAGIVWINCS QPCFTQAPWG GVKRSGFGRE LGEWGLDNYL SVKQVTLYTS NDPWGWYKSP
501: N

Arabidopsis Description

ALDH10A8ALDH10A8 [Source:UniProtKB/TrEMBL;Acc:A0A178W4Y2]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.