CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42067	Soybean	mitochondrion	97.95	97.23
KRH10621	Soybean	cytosol	86.41	89.75
VIT_03s0132g00200.t01	Wine grape	mitochondrion	83.24	82.93
PGSC0003DMT400027691	Potato	mitochondrion	82.31	82.31
Bra037214.1-P	Field mustard	mitochondrion	80.07	81.59
CDX81452	Canola	mitochondrion	79.89	81.4
CDY37216	Canola	mitochondrion	79.89	81.4
GSMUA_Achr4P22360_001	Banana	mitochondrion	80.63	80.48
KRH21731	Soybean	cytosol	44.88	77.24
Os07t0188800-01	Rice	mitochondrion	75.61	76.03
TraesCS2A01G477900.1	Wheat	mitochondrion	75.42	75.98
HORVU2Hr1G107520.1	Barley	cytosol, peroxisome	45.07	75.86
TraesCS2B01G501200.1	Wheat	golgi, mitochondrion, unclear	75.23	75.66
TraesCS2D01G477100.2	Wheat	golgi, mitochondrion	75.05	75.47
Zm00001d019054_P001	Maize	mitochondrion	75.23	75.23
EER95994	Sorghum	mitochondrion	75.42	75.0
AT2G14170.1	Thale cress	mitochondrion	78.96	69.85
HORVU2Hr1G107550.1	Barley	plasma membrane	74.3	68.79
KRH45519	Soybean	nucleus	68.16	36.49
KRH41589	Soybean	nucleus	28.86	30.69
KRH41586	Soybean	nucleus	28.31	30.34
KRH60293	Soybean	nucleus	28.12	30.08
KRH48412	Soybean	nucleus	27.93	29.94
KRH03318	Soybean	mitochondrion	25.14	29.93
KRH48414	Soybean	peroxisome	10.99	29.8
KRH39268	Soybean	nucleus	27.75	29.74
KRH48410	Soybean	cytosol	27.75	29.74
KRH39270	Soybean	cytosol	27.56	29.54
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.31	29.4
KRH45689	Soybean	nucleus	28.68	28.73
KRH20324	Soybean	mitochondrion	28.86	28.7
KRH60295	Soybean	mitochondrion, plastid	28.68	28.62
KRG99327	Soybean	mitochondrion	28.49	28.54
KRG93347	Soybean	peroxisome	27.93	28.41
KRH69545	Soybean	mitochondrion	28.49	28.39
KRH74615	Soybean	mitochondrion	28.31	28.25
KRH54453	Soybean	endoplasmic reticulum	26.07	27.83
KRH13776	Soybean	mitochondrion	27.56	27.56
KRH43670	Soybean	mitochondrion	27.56	27.56
KRH54419	Soybean	nucleus	27.37	27.22
KRH57015	Soybean	endoplasmic reticulum	24.39	26.84
KRH03077	Soybean	cytosol, nucleus	24.02	25.96
KRH72280	Soybean	cytosol, nucleus	24.02	25.96
KRH05288	Soybean	cytosol	23.46	25.4
KRH37502	Soybean	endoplasmic reticulum	23.46	24.75
KRH12550	Soybean	mitochondrion	23.28	24.61
KRH63505	Soybean	mitochondrion	19.93	24.1
KRH11951	Soybean	endoplasmic reticulum	21.97	19.77
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	21.23	19.52
KRH50740	Soybean	endoplasmic reticulum	21.42	19.26
KRH02344	Soybean	endoplasmic reticulum	21.04	18.96

Protein Annotations

KEGG:00280+1.2.1.27	KEGG:00640+1.2.1.27	EntrezGene:100791508	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.7.6.3
EMBL:ACUP02004645	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
EnsemblPlantsGene:GLYMA_07G183600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004491	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	UniProt:I1KL66	InterPro:IPR016162	InterPro:IPR016163
EnsemblPlants:KRH49851	ProteinID:KRH49851	ProteinID:KRH49851.1	InterPro:MeMal-semiAld_DH	PFAM:PF00171	ScanProsite:PS00070
PANTHER:PTHR43866	PANTHER:PTHR43866:SF5	MetaCyc:PWY-5642	MetaCyc:PWY-6373	SUPFAM:SSF53720	TIGRFAMs:TIGR01722
UniParc:UPI0002337D6B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:35125697..35132308

Molecular Weight (calculated)

57618.4 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.031

Length

537 amino acids

Sequence
(BLAST)

001: MLRLSIQRVR KLNFLSPQIS ALGRSHLSTA AEPSSSKSNP PRVPNLIGGS FVDSKASTVI DVINPATQEV VSQVPLSTDE EFKEAVSAAK KAFPSWRNTP
101: ITTRQRVMLK LQELIRRDMD KLALNVTTEQ GKTLKDAQGD VFRGLEVVEH ACGMATLQMG EYVSNVSHGI DTYSIREPLG VCAGICPFNF PAMIPLWMFP
201: MAITCGNTFV LKPSEKDPGA SVMLAELALE AGLPEGVLNI VHGTHDIVNA ICDDDDIKAI SFVGSNVAGM HIYSRAAAKG KRVQSNMGAK NHAIVMADAN
301: VDATLNALVA AGFGAAGQRC MALSTVVFVG GSKPWEDKLL EHAKALKVNA GTEPDTDLGP VISKQAKERI HRLVQSGVES GARLLLDGRN IVVPGYESGN
401: FIGPTILSDI NANMECYKEE IFGPVLLFME ADSLEEAINI INSNKYGNGA SIFTTSGVAA RKFQTEIEAG QVGINVPIPV PLPFFSFTGN KASFAGDLNF
501: YGKAGVNFYT QIKTITQQWK DSTGGSKINL AMPTSQK

Best Arabidopsis Sequence Match ( AT2G14170.1 )
(BLAST)

001: MVRVKQKNLE SYRSNGTYPP TWRNPTTSFA PDQHRVSIHS SLKSKTKRRR LYKEADDNTK LRSSSSTTTT TTTMLLRISG NNLRPLRPQF LALRSSWLST
101: SPEQSTQPQM PPRVPNLIGG SFVESQSSSF IDVINPATQE VVSKVPLTTN EEFKAAVSAA KQAFPLWRNT PITTRQRVML KFQELIRKNM DKLAMNITTE
201: QGKTLKDSHG DIFRGLEVVE HACGMATLQM GEYLPNVSNG VDTYSIREPL GVCAGICPFN FPAMIPLWMF PVAVTCGNTF ILKPSEKDPG ASVILAELAM
301: EAGLPDGVLN IVHGTNDTVN AICDDEDIRA VSFVGSNTAG MHIYARAAAK GKRIQSNMGA KNHGLVLPDA NIDATLNALL AAGFGAAGQR CMALSTVVFV
401: GDAKSWEDKL VERAKALKVT CGSEPDADLG PVISKQAKER ICRLIQSGVD DGAKLLLDGR DIVVPGYEKG NFIGPTILSG VTPDMECYKE EIFGPVLVCM
501: QANSFDEAIS IINKNKYGNG AAIFTSSGAA ARKFQMDIEA GQIGINVPIP VPLPFFSFTG NKASFAGDLN FYGKAGVDFF TQIKTVTQQW KDIPTSVSLA
601: MPTSQKQ

Arabidopsis Description

ALDH6B2Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WM29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.