CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
peroxisome 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57015	Soybean	endoplasmic reticulum	82.7	85.25
AT1G74920.1	Thale cress	cytosol, peroxisome, plastid	78.93	79.24
VIT_17s0000g07650.t01	Wine grape	peroxisome	78.73	78.73
Bra003781.1-P	Field mustard	plastid	78.13	78.44
CDX68159	Canola	plastid	78.13	78.44
CDX85862	Canola	cytosol, peroxisome, plastid	78.13	78.29
GSMUA_Achr9P16120_001	Banana	peroxisome	77.34	77.03
VIT_17s0000g07660.t01	Wine grape	cytosol	37.77	76.31
Os08t0424500-01	Rice	plastid	74.16	74.16
EES13852	Sorghum	peroxisome	73.36	73.07
Os04t0464200-01	Rice	peroxisome	73.36	73.07
Zm00001d032257_P001	Maize	extracellular	73.16	72.73
Zm00001d050339_P001	Maize	extracellular	72.56	72.28
Zm00001d025626_P002	Maize	mitochondrion	72.56	72.13
PGSC0003DMT400063205	Potato	cytosol, peroxisome, plastid	72.37	72.08
TraesCS2D01G326900.1	Wheat	golgi, unclear	72.37	71.94
KXG26485	Sorghum	peroxisome	72.37	71.94
HORVU2Hr1G080970.1	Barley	peroxisome	71.97	71.54
TraesCS6A01G371100.1	Wheat	golgi, nucleus, unclear	71.37	71.51
Solyc03g113800.2.1	Tomato	plastid	71.77	71.49
TraesCS6D01G355000.2	Wheat	golgi	70.97	70.97
PGSC0003DMT400083025	Potato	cytosol	70.97	70.83
TraesCS6B01G408100.1	Wheat	mitochondrion	70.78	70.78
Solyc06g071290.2.1	Tomato	plastid	70.58	70.44
TraesCS2B01G346000.1	Wheat	mitochondrion	42.74	69.13
HORVU6Hr1G087460.1	Barley	plastid	71.57	68.44
TraesCS2A01G336000.1	Wheat	peroxisome	71.97	66.54
KRH41586	Soybean	nucleus	43.34	43.51
KRH60293	Soybean	nucleus	43.14	43.23
KRH48412	Soybean	nucleus	42.94	43.11
KRH39268	Soybean	nucleus	42.74	42.91
KRH41589	Soybean	nucleus	42.74	42.57
KRH48410	Soybean	cytosol	41.95	42.12
KRH39270	Soybean	cytosol	41.75	41.92
KRH03318	Soybean	mitochondrion	36.78	41.02
KRH48414	Soybean	peroxisome	16.1	40.91
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	41.55	40.43
KRH60295	Soybean	mitochondrion, plastid	42.54	39.78
KRG99327	Soybean	mitochondrion	39.76	37.31
KRH45689	Soybean	nucleus	39.56	37.13
KRH74615	Soybean	mitochondrion	39.56	36.99
KRH69545	Soybean	mitochondrion	39.56	36.92
KRH20324	Soybean	mitochondrion	39.36	36.67
KRH54419	Soybean	nucleus	39.36	36.67
KRG93347	Soybean	peroxisome	38.37	36.55
KRH13776	Soybean	mitochondrion	38.37	35.94
KRH43670	Soybean	mitochondrion	38.37	35.94
KRH63505	Soybean	mitochondrion	30.62	34.68
KRH72280	Soybean	cytosol, nucleus	30.42	30.78
KRH03077	Soybean	cytosol, nucleus	30.42	30.78
KRH05288	Soybean	cytosol	30.22	30.65
KRH10621	Soybean	cytosol	28.43	27.66
KRH21731	Soybean	cytosol	17.1	27.56
KRH37502	Soybean	endoplasmic reticulum	27.44	27.11
KRH12550	Soybean	mitochondrion	27.24	26.97
KRH49851	Soybean	mitochondrion	27.83	26.07
KRH42067	Soybean	mitochondrion	27.83	25.88
KRH02344	Soybean	endoplasmic reticulum	30.42	25.67
KRH50740	Soybean	endoplasmic reticulum	30.42	25.63
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	29.22	25.17
KRH11951	Soybean	endoplasmic reticulum	29.82	25.13
KRH45519	Soybean	nucleus	27.63	13.86

Protein Annotations

EntrezGene:100170755	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:9.4.1.2	EMBL:AB333794	EMBL:ACUP02003524
ProteinID:ADN03181.1	ProteinID:ADN03182.1	ProteinID:ADN03183.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	UniProt:B0M1A6	EnsemblPlantsGene:GLYMA_06G186300	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0019145
GO:GO:0033737	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH54453	ProteinID:KRH54453
ProteinID:KRH54453.1	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43860	PANTHER:PTHR43860:SF3
SUPFAM:SSF53720	UniParc:UPI000165BB5B	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:16210894..16216901

Molecular Weight (calculated)

54742.7 Da

IEP (calculated)

4.993

GRAVY (calculated)

-0.025

Length

503 amino acids

Sequence
(BLAST)

001: MAISIPSRQL FIDGEWKVPL LNNRFPIINP ATEDIIGHIP AATKEDVDLA VDAAKRAFSH NKGKDWSSAP GSVRARYLRA IASKITEKKD ELGKLEAIDC
101: GKPLDEALAD LDDVIGCFNY YAELAEGLDA KQNAPVSLPM ETFKSYVLKE PIGVVALITP WNYPLLMATW KVAPALAAGC TAILKPSELA SVTCLELAEI
201: CREVGLPPGV LNIVTGLGNE AGAPLSSHPD VDKISFTGSS ATGSRIMTAA AQLTKPVSLE LGGKSPIIVF EDVDLDKTAE WTIFGCFFTN GQICSATSRL
301: IVHESIATEF VNRLVQWAKN IKISDPFEEG CRLGPIVSEG QYKKVLNCIS TAKSEGATIL IGGSRPEHLK KGYFVEPTII TDVTTSMQIW REEVFGPVLC
401: VKTFSTEEEA IELANDTHYG LGSAVMSKDL ERCERISKAI QAGIVWINCA QPSFIQAPWG GVKRSGFGRE LGEWGLENYL SVKQVTKYIS DEPWGWYQSP
501: SKL

Best Arabidopsis Sequence Match ( AT1G74920.1 )
(BLAST)

001: MAIPMPTRQL FIDGEWREPI LKKRIPIVNP ATEEVIGDIP AATTEDVDVA VNAARRALSR NKGKDWAKAP GAVRAKYLRA IAAKVNERKT DLAKLEALDC
101: GKPLDEAVWD MDDVAGCFEF YADLAEGLDA KQKAPVSLPM ESFKSYVLKQ PLGVVGLITP WNYPLLMAVW KVAPSLAAGC TAILKPSELA SVTCLELADI
201: CREVGLPPGV LNVLTGFGSE AGAPLASHPG VDKIAFTGSF ATGSKVMTAA AQLVKPVSME LGGKSPLIVF DDVDLDKAAE WALFGCFWTN GQICSATSRL
301: LVHESIASEF IEKLVKWSKN IKISDPMEEG CRLGPVVSKG QYEKILKFIS TAKSEGATIL HGGSRPEHLE KGFFIEPTII TDVTTSMQIW REEVFGPVLC
401: VKTFASEDEA IELANDSHYG LGAAVISNDT ERCDRISEAF EAGIVWINCS QPCFTQAPWG GVKRSGFGRE LGEWGLDNYL SVKQVTLYTS NDPWGWYKSP
501: N

Arabidopsis Description

ALDH10A8ALDH10A8 [Source:UniProtKB/TrEMBL;Acc:A0A178W4Y2]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.