CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 1
peroxisome 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41586	Soybean	nucleus	95.62	95.81
KRH48412	Soybean	nucleus	81.47	81.64
KRH39268	Soybean	nucleus	80.08	80.24
KRH41589	Soybean	nucleus	78.29	77.82
KRH48414	Soybean	peroxisome	30.48	77.27
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	79.28	76.98
KRH48410	Soybean	cytosol	75.9	76.05
KRH39270	Soybean	cytosol	74.7	74.85
KRH60295	Soybean	mitochondrion, plastid	78.49	73.23
Solyc12g007030.1.1	Tomato	cytosol	71.31	71.6
PGSC0003DMT400000852	Potato	cytosol	71.31	71.6
GSMUA_Achr6P04810_001	Banana	cytosol	60.76	70.93
KXG32803	Sorghum	cytosol	70.52	70.66
Os01t0591000-01	Rice	cytosol	70.52	70.52
TraesCS3D01G412700.2	Wheat	golgi	69.72	70.0
TraesCS3A01G417200.1	Wheat	cytosol	69.52	69.8
CDX94807	Canola	cytoskeleton, cytosol, peroxisome	69.52	69.66
AT3G24503.1	Thale cress	peroxisome	69.52	69.66
TraesCS3B01G452100.1	Wheat	golgi	69.32	69.6
CDX93017	Canola	cytoskeleton, cytosol, peroxisome	69.32	69.46
Bra001952.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	69.12	69.26
GSMUA_Achr5P24920_001	Banana	cytosol	69.32	69.05
TraesCS1D01G310100.1	Wheat	peroxisome	67.73	68.69
TraesCS1B01G321900.1	Wheat	peroxisome	67.53	68.48
EES00989	Sorghum	cytosol	68.53	68.25
TraesCS1A01G310600.1	Wheat	peroxisome	67.13	67.94
HORVU0Hr1G028680.4	Barley	peroxisome	56.57	67.46
HORVU1Hr1G068020.1	Barley	cytosol	66.73	67.13
HORVU0Hr1G031700.1	Barley	cytosol	66.73	67.13
TraesCS3A01G212300.1	Wheat	peroxisome	67.13	67.0
Zm00001d044340_P001	Maize	cytosol	68.13	66.93
Os01t0591300-01	Rice	cytosol	67.53	66.86
HORVU3Hr1G092680.2	Barley	mitochondrion, peroxisome, plastid	69.32	66.29
TraesCS7B01G259100.1	Wheat	peroxisome	66.93	65.5
Zm00001d011259_P001	Maize	cytosol	66.53	65.23
TraesCS7D01G353900.1	Wheat	peroxisome	66.33	64.66
TraesCS7B01G259200.1	Wheat	peroxisome	65.74	64.33
TraesCS7A01G369400.1	Wheat	unclear	65.94	64.27
TraesCS7D01G354000.1	Wheat	peroxisome	65.34	63.94
KXG20268	Sorghum	cytosol	66.33	63.92
Zm00001d036933_P001	Maize	cytosol	67.33	63.41
TraesCS7A01G369300.1	Wheat	peroxisome	66.93	60.43
HORVU7Hr1G085120.2	Barley	mitochondrion	66.73	60.04
KRH03318	Soybean	mitochondrion	51.2	56.98
Zm00001d044339_P003	Maize	cytosol, peroxisome, plasma membrane	65.94	56.78
KRH45689	Soybean	nucleus	56.57	52.99
KRG99327	Soybean	mitochondrion	56.18	52.61
KRH74615	Soybean	mitochondrion	54.78	51.12
KRH54419	Soybean	nucleus	54.78	50.93
KRH69545	Soybean	mitochondrion	54.38	50.65
KRH20324	Soybean	mitochondrion	54.18	50.37
KRG93347	Soybean	peroxisome	51.39	48.86
KRH63505	Soybean	mitochondrion	42.63	48.2
GSMUA_Achr3P26460_001	Banana	cytosol	69.52	44.57
KRH54453	Soybean	endoplasmic reticulum	43.23	43.14
KRH57015	Soybean	endoplasmic reticulum	40.24	41.39
KRH13776	Soybean	mitochondrion	36.45	34.08
KRH43670	Soybean	mitochondrion	36.26	33.89
KRH72280	Soybean	cytosol, nucleus	29.68	29.98
KRH03077	Soybean	cytosol, nucleus	29.68	29.98
KRH05288	Soybean	cytosol	28.69	29.03
KRH10621	Soybean	cytosol	29.88	29.01
KRH21731	Soybean	cytosol	17.93	28.85
KRH49851	Soybean	mitochondrion	30.08	28.12
KRH42067	Soybean	mitochondrion	29.88	27.73
KRH37502	Soybean	endoplasmic reticulum	25.5	25.15
KRH12550	Soybean	mitochondrion	25.3	25.0
KRH11951	Soybean	endoplasmic reticulum	26.89	22.61
KRH50740	Soybean	endoplasmic reticulum	26.89	22.61
KRH02344	Soybean	endoplasmic reticulum	26.69	22.48
KRH36977	Soybean	endoplasmic reticulum, extracellular, vacuole	25.9	22.26
KRH45519	Soybean	nucleus	28.49	14.26

Protein Annotations

EntrezGene:100817721	MapMan:21.5.1	Gene3D:3.40.309.10	Gene3D:3.40.605.10	UniProt:A0A0R0K6H9	EMBL:ACUP02003357
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
ncoils:Coil	EnsemblPlantsGene:GLYMA_05G231800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004029	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
EnsemblPlants:KRH60293	ProteinID:KRH60293	ProteinID:KRH60293.1	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687
PANTHER:PTHR11699	PANTHER:PTHR11699:SF182	SUPFAM:SSF53720	UniParc:UPI000233A9F5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:40924505..40929251

Molecular Weight (calculated)

54525.5 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.083

Length

502 amino acids

Sequence
(BLAST)

001: MTFNNGDAAA ASLNKVPTVN FTKLFIDGHF VHSVSGKTFE TIDPRTGDVI ARISEGDKED IDIAVKAARH AFDNGPWPRL PGSERGRILL KWAELIEENA
101: EELAALDAID AGKLYHMCRN LEVPAAANTL RYYAGAADKI HGEVLKMSRD FHAYTLLEPL GVVGHITPWN FPNTMFYIKV APSLAAGCTM VLKPAEQTPL
201: SALFNAHLAK LAGIPDGVIN VVPGFGPTAG AALSSHMDVD KVSFTGSTQT GREIMQAAAK SNLKQVSLEL GGKSPLIIFD DADIDKAAEL ALLGILYNKG
301: EVCVASSRVL VQEGIYDEFE KKLVEKAKAW VVGDPFDPKV QQGPQVDKEQ FEKVLSYIEH GKKEGATLLT GGKTVGNKGY FIEPTIFSNI REDMLIAQDE
401: IFGPVMALKK FKTIEEAIKS ANNTKYGLAA GIVTKNLDTA NTVSRSIRAG TIWINCYFAF GDDVPFGGYK MSGFGKDHGL EALHKYLQVK SVVTPLYNSP
501: WL

Best Arabidopsis Sequence Match ( AT3G24503.1 )
(BLAST)

001: MENGKCNGAT TVKLPEIKFT KLFINGQFID AASGKTFETI DPRNGEVIAT IAEGDKEDVD LAVNAARYAF DHGPWPRMTG FERAKLINKF ADLIEENIEE
101: LAKLDAVDGG KLFQLGKYAD IPATAGHFRY NAGAADKIHG ETLKMTRQSL FGYTLKEPIG VVGNIIPWNF PSIMFATKVA PAMAAGCTMV VKPAEQTSLS
201: ALFYAHLSKE AGIPDGVLNI VTGFGSTAGA AIASHMDVDK VSFTGSTDVG RKIMQAAAAS NLKKVSLELG GKSPLLIFND ADIDKAADLA LLGCFYNKGE
301: ICVASSRVFV QEGIYDKVVE KLVEKAKDWT VGDPFDSTAR QGPQVDKRQF EKILSYIEHG KNEGATLLTG GKAIGDKGYF IQPTIFADVT EDMKIYQDEI
401: FGPVMSLMKF KTVEEGIKCA NNTKYGLAAG ILSQDIDLIN TVSRSIKAGI IWVNCYFGFD LDCPYGGYKM SGNCRESGMD ALDNYLQTKS VVMPLHNSPW
501: M

Arabidopsis Description

ALDH2C4Aldehyde dehydrogenase family 2 member C4 [Source:UniProtKB/Swiss-Prot;Acc:Q56YU0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.