Factsheet for TraesCS3D01G412700.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G452100.1	Wheat	golgi	98.2	98.2
TraesCS3A01G417200.1	Wheat	cytosol	98.0	98.0
HORVU3Hr1G092680.2	Barley	mitochondrion, peroxisome, plastid	95.4	90.86
Os01t0591000-01	Rice	cytosol	87.0	86.65
KXG32803	Sorghum	cytosol	85.6	85.43
KRH48412	Soybean	nucleus	72.6	72.46
KRH48414	Soybean	peroxisome	28.6	72.22
KRH39268	Soybean	nucleus	72.0	71.86
TraesCS1D01G310100.1	Wheat	peroxisome	70.4	71.11
KRH41586	Soybean	nucleus	71.0	70.86
KRH39267	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	73.0	70.6
Solyc12g007030.1.1	Tomato	cytosol	70.2	70.2
PGSC0003DMT400000852	Potato	cytosol	70.0	70.0
CDX93017	Canola	cytoskeleton, cytosol, peroxisome	70.0	69.86
KRH60293	Soybean	nucleus	70.0	69.72
Bra001952.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	69.8	69.66
KRH48410	Soybean	cytosol	69.4	69.26
CDX94807	Canola	cytoskeleton, cytosol, peroxisome	69.2	69.06
Zm00001d044339_P003	Maize	cytosol, peroxisome, plasma membrane	80.2	68.78
TraesCS7D01G353900.1	Wheat	peroxisome	70.6	68.54
AT3G24503.1	Thale cress	peroxisome	68.4	68.26
KRH39270	Soybean	cytosol	68.4	68.26
TraesCS7D01G354000.1	Wheat	peroxisome	70.0	68.23
KRH41589	Soybean	nucleus	68.4	67.72
KRH60295	Soybean	mitochondrion, plastid	68.4	63.57
TraesCS7D01G211900.1	Wheat	mitochondrion	58.2	53.01
TraesCS6D01G272400.1	Wheat	mitochondrion	56.8	52.11
GSMUA_Achr3P26460_001	Banana	cytosol	72.6	46.36
TraesCS2D01G326900.1	Wheat	golgi, unclear	41.8	41.3
TraesCS6D01G355000.2	Wheat	golgi	39.8	39.56
TraesCS6D01G145400.4	Wheat	mitochondrion	40.4	37.34
TraesCS2D01G197300.1	Wheat	golgi	29.2	29.44
TraesCS5D01G218400.1	Wheat	peroxisome	27.2	26.72
TraesCS2D01G477100.2	Wheat	golgi, mitochondrion	27.0	25.28
TraesCS2D01G094400.1	Wheat	golgi	28.6	24.07

Protein Annotations

MapMan:21.5.1	Gene3D:3.40.309.10	Gene3D:3.40.605.10	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163
PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR11699	PANTHER:PTHR11699:SF227	SUPFAM:SSF53720
EnsemblPlantsGene:TraesCS3D01G412700	EnsemblPlants:TraesCS3D01G412700.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:525332892..525336140

Molecular Weight (calculated)

53974.3 Da

IEP (calculated)

6.075

GRAVY (calculated)

-0.015

Length

500 amino acids

Sequence
(BLAST)

001: MAAANGAKGF EVPELDIKFT KLFINGQFVD AASGKTFETR DPRTGEVIAK IAEGDKADID LAVKAAREAF DNGPWPRMPG CARARIMHRF ADLVDQHVEE
101: LAALDTVDAG KLFLMGKMMD IPGGANLLRY YAGAADKIHG ETLKMARPLH GYTLKEPVGV VGHIVPWNYP TTMFFFKVSP ALAAGCTMVV KPAEQTPLSA
201: LFYAHLAKEA GIPDGVLNVV PGFGPTAGAA MASHMDVDKI SFTGSTEVGR LVMQAAAMSN LKPVSLELGG KSPVIVFDDA DVDMAVNLVN MATYMNKGEI
301: CVAGTRIYVQ EGIYDAFVKK SVELAKKSVV GDPFNPNVHQ GPQVDKDQYE KVLKYIDVGK SEGATLLTGG KPCSDKGYYI EPTIFTNVTD DMAIAQEEIF
401: GPVMALMKFK TVEEVIQKAN STRYGLAAGV VTKNIDTMNT VSRSVRSGVV WVNCYFAFDP DAPFGGCKMS GFGKDMGTDA LEKYLHTKTV VTPLYNTPWL

Best Arabidopsis Sequence Match ( AT3G24503.1 )
(BLAST)

001: MENGKCNGAT TVKLPEIKFT KLFINGQFID AASGKTFETI DPRNGEVIAT IAEGDKEDVD LAVNAARYAF DHGPWPRMTG FERAKLINKF ADLIEENIEE
101: LAKLDAVDGG KLFQLGKYAD IPATAGHFRY NAGAADKIHG ETLKMTRQSL FGYTLKEPIG VVGNIIPWNF PSIMFATKVA PAMAAGCTMV VKPAEQTSLS
201: ALFYAHLSKE AGIPDGVLNI VTGFGSTAGA AIASHMDVDK VSFTGSTDVG RKIMQAAAAS NLKKVSLELG GKSPLLIFND ADIDKAADLA LLGCFYNKGE
301: ICVASSRVFV QEGIYDKVVE KLVEKAKDWT VGDPFDSTAR QGPQVDKRQF EKILSYIEHG KNEGATLLTG GKAIGDKGYF IQPTIFADVT EDMKIYQDEI
401: FGPVMSLMKF KTVEEGIKCA NNTKYGLAAG ILSQDIDLIN TVSRSIKAGI IWVNCYFGFD LDCPYGGYKM SGNCRESGMD ALDNYLQTKS VVMPLHNSPW
501: M

Arabidopsis Description

ALDH2C4Aldehyde dehydrogenase family 2 member C4 [Source:UniProtKB/Swiss-Prot;Acc:Q56YU0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.