Factsheet for TraesCS6D01G145400.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G155500.1	Wheat	mitochondrion	95.75	98.48
TraesCS6B01G183600.3	Wheat	mitochondrion	95.56	98.29
Zm00001d053776_P015	Maize	mitochondrion	87.8	90.13
KXG29578	Sorghum	mitochondrion	87.25	89.56
HORVU6Hr1G031480.15	Barley	mitochondrion	90.57	88.29
Os02t0173900-01	Rice	mitochondrion	49.35	86.13
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	54.71	82.91
PGSC0003DMT400044163	Potato	plastid	69.69	73.49
AT1G79440.1	Thale cress	mitochondrion	71.72	73.48
VIT_19s0085g00880.t01	Wine grape	plastid	71.35	72.83
Solyc09g090700.1.1	Tomato	plastid	69.69	72.22
Bra035119.1-P	Field mustard	mitochondrion	70.43	71.89
KRH13776	Soybean	mitochondrion	70.24	70.76
KRH43670	Soybean	mitochondrion	70.06	70.58
CDX87380	Canola	mitochondrion	70.43	69.02
CDX88542	Canola	mitochondrion	70.43	68.9
VIT_19s0085g00870.t01	Wine grape	cytosol	61.55	67.55
TraesCS1D01G310100.1	Wheat	peroxisome	36.97	40.4
TraesCS3D01G412700.2	Wheat	golgi	37.34	40.4
TraesCS7D01G353900.1	Wheat	peroxisome	36.41	38.25
TraesCS7D01G354000.1	Wheat	peroxisome	36.23	38.21
TraesCS2D01G326900.1	Wheat	golgi, unclear	35.49	37.94
TraesCS6D01G355000.2	Wheat	golgi	34.75	37.38
TraesCS7D01G211900.1	Wheat	mitochondrion	36.23	35.7
TraesCS6D01G272400.1	Wheat	mitochondrion	35.49	35.23
TraesCS2D01G197300.1	Wheat	golgi	25.88	28.23
TraesCS5D01G218400.1	Wheat	peroxisome	26.43	28.09
TraesCS2D01G477100.2	Wheat	golgi, mitochondrion	25.69	26.03
TraesCS2D01G094400.1	Wheat	golgi	26.99	24.58

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009013	GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	InterPro:Succ_semiAld_DH	TIGRFAMs:TIGR01780
EnsemblPlantsGene:TraesCS6D01G145400	EnsemblPlants:TraesCS6D01G145400.4	TIGR:cd07103	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:115781605..115791046

Molecular Weight (calculated)

57689.0 Da

IEP (calculated)

7.934

GRAVY (calculated)

0.084

Length

541 amino acids

Sequence
(BLAST)

001: MAMAMRRAAA LGARHILAAS VSASSRVASR RHMGSVDAGA AMEKIRAAGL LRTRGLIGGK WVDAYDGKTI EVQNPATGEV LANVACMGNR ETADAITSAN
101: TTFYTWSKLT ASERSKALRK WHDLLMSHKE ELALLMTLEQ GKPMKEALGE VNYGASFIEF FAEEAKRVYG DIIPPTLADR RLLVLKQPIG VVGAITPWNF
201: PLAMITRKVG PALACGCTVV VKPSEFTPLT ALAAADLALQ AGIPAGALNV VMGNAPEIGD ELMQSMQVRK ITFTGSTAVG KKLMAGSANT VKKVSLELGG
301: NAPCIVFDDA DIDVAVKGSL AAKFRNSGQT CVCANRILVQ EGIYEKFASA FVKAVQSLQV GNGLEESTSQ GPLINEAAVQ KVEKFVGDAT SKGANIMLGG
401: KRHSLGMSFY EPTVVGNVSN DMLLFRFELL MCNKANTFCF SEEVFGPVAP LIPFKTEEEA IHLANDTNAG LAAYMFTKNI ARSWRVSEAL EYGLVGVNEG
501: LISTEVAPFG GVKQSGLGRE GSKYGMDDYL EIKYVCMGNL G

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.