Factsheet for GSMUA_Achr5P26830_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plasma membrane, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, secretory
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G183600.3	Wheat	mitochondrion	83.47	56.65
TraesCS6A01G155500.1	Wheat	mitochondrion	83.47	56.65
KXG29578	Sorghum	mitochondrion	83.47	56.55
Zm00001d053776_P015	Maize	mitochondrion	83.19	56.36
TraesCS6D01G145400.4	Wheat	mitochondrion	82.91	54.71
PGSC0003DMT400044163	Potato	plastid	78.43	54.58
Solyc09g090700.1.1	Tomato	plastid	78.71	53.83
AT1G79440.1	Thale cress	mitochondrion	78.71	53.22
VIT_19s0085g00880.t01	Wine grape	plastid	78.71	53.02
KRH13776	Soybean	mitochondrion	79.55	52.89
KRH43670	Soybean	mitochondrion	79.27	52.7
Bra035119.1-P	Field mustard	mitochondrion	77.31	52.08
VIT_19s0085g00870.t01	Wine grape	cytosol	69.19	50.1
CDX87380	Canola	mitochondrion	77.31	50.0
HORVU6Hr1G031480.15	Barley	mitochondrion	77.31	49.73
CDX88542	Canola	mitochondrion	77.03	49.73
Os02t0173900-01	Rice	mitochondrion	30.81	35.48
GSMUA_Achr6P04810_001	Banana	cytosol	39.78	33.02
GSMUA_Achr5P24920_001	Banana	cytosol	43.14	30.56
GSMUA_Achr9P16120_001	Banana	peroxisome	41.74	29.5
GSMUA_Achr3P06170_001	Banana	mitochondrion	40.06	26.88
GSMUA_Achr5P05290_001	Banana	mitochondrion	39.5	26.01
GSMUA_Achr7P19330_001	Banana	cytosol	29.13	20.93
GSMUA_Achr6P01980_001	Banana	cytosol	28.29	20.36
GSMUA_Achr8P23610_001	Banana	cytosol, peroxisome, plastid	29.13	20.19
GSMUA_Achr4P22360_001	Banana	mitochondrion	29.13	19.33
GSMUA_Achr3P26460_001	Banana	cytosol	41.46	18.9
GSMUA_Achr8P10590_001	Banana	endoplasmic reticulum	31.37	18.82
GSMUA_Achr11P...	Banana	endoplasmic reticulum	30.81	18.52

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G26830_001	EnsemblPlants:GSMUA_Achr5P26830_001
EnsemblPlants:GSMUA_Achr5T26830_001	InterPro:IPR016162	InterPro:IPR016163	UniProt:M0T208	PFAM:PF00171	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	SignalP:SignalP-noTM	UniParc:UPI00029509E2
SEG:seg	:	:	:	:	:

Description

Succinate-semialdehyde dehydrogenase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G26830_001]

Coordinates

chr5:+:27520796..27529949

Molecular Weight (calculated)

37638.9 Da

IEP (calculated)

6.530

GRAVY (calculated)

0.183

Length

357 amino acids

Sequence
(BLAST)

001: MGMSRSSLSL LMHLVKPVGV VGAITPWNFP LAMITRKVGP ALACGCTVVV KPSEYTPLTA LAAAELALQA GIPPGALNVV MGNASDIGDT LLESTQVRKI
101: TFTGSTAVGK KLMAGSASTV KKISLELGGN APCIVFDDAD LDVAVKGSLA AKFRNSGQTC VCANRILVQE GIYEKFANAF AKAVQALQVG NGLIEGTVQG
201: PLINEAALEK VETMVQDATA KGADVVTGGK RHSLGMTFYE PTVLGNVNKE MLIFRQEVFG PVAPLMRFKT EEEAIQMAND TNAGLAAYIF TTSMPRTWRV
301: SEALEYGLVG VNEGLISTEV APFGGFKQSG LGREGSKYGM DEYLEIKYVC LGNLKGT

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.