Factsheet for TraesCS6A01G155500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G183600.3	Wheat	mitochondrion	98.67	98.67
TraesCS6D01G145400.4	Wheat	mitochondrion	98.48	95.75
Zm00001d053776_P015	Maize	mitochondrion	90.49	90.32
KXG29578	Sorghum	mitochondrion	89.73	89.56
HORVU6Hr1G031480.15	Barley	mitochondrion	92.59	87.75
Os02t0173900-01	Rice	mitochondrion	50.38	85.48
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	56.65	83.47
AT1G79440.1	Thale cress	mitochondrion	73.38	73.11
PGSC0003DMT400044163	Potato	plastid	70.91	72.71
VIT_19s0085g00880.t01	Wine grape	plastid	72.43	71.89
Bra035119.1-P	Field mustard	mitochondrion	72.05	71.51
Solyc09g090700.1.1	Tomato	plastid	70.91	71.46
KRH13776	Soybean	mitochondrion	72.05	70.58
KRH43670	Soybean	mitochondrion	71.86	70.39
CDX87380	Canola	mitochondrion	72.05	68.66
CDX88542	Canola	mitochondrion	72.05	68.54
VIT_19s0085g00870.t01	Wine grape	cytosol	62.55	66.73
TraesCS3A01G417200.1	Wheat	cytosol	38.4	40.4
TraesCS1A01G310600.1	Wheat	peroxisome	37.64	39.92
TraesCS3A01G212300.1	Wheat	peroxisome	37.45	39.16
TraesCS7A01G369400.1	Wheat	unclear	36.88	37.67
TraesCS6A01G371100.1	Wheat	golgi, nucleus, unclear	35.55	37.25
TraesCS7A01G369300.1	Wheat	peroxisome	37.64	35.61
TraesCS2A01G336000.1	Wheat	peroxisome	36.5	35.29
TraesCS7A01G210100.1	Wheat	mitochondrion	36.5	34.97
TraesCS2A01G190700.1	Wheat	cytosol	27.19	28.83
TraesCS5A01G213600.1	Wheat	golgi, unclear	27.57	28.49
TraesCS2A01G477900.1	Wheat	mitochondrion	26.43	26.08
TraesCS2A01G096000.1	Wheat	vacuole	27.76	24.58

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009013	GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491
GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171	ScanProsite:PS00070
ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5	SUPFAM:SSF53720	InterPro:Succ_semiAld_DH	TIGRFAMs:TIGR01780
EnsemblPlantsGene:TraesCS6A01G155500	EnsemblPlants:TraesCS6A01G155500.1	TIGR:cd07103	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:144259511..144268921

Molecular Weight (calculated)

55768.5 Da

IEP (calculated)

7.773

GRAVY (calculated)

0.067

Length

526 amino acids

Sequence
(BLAST)

001: MAMAMRRAAA LGARHILAAS ASASSRAASR RHMGSLDAGA AMEKIRAAGL LRTRGLIGGQ WVDAYDGKTI EVQNPATGEV LANVACMGNR ETADAITSAN
101: TTFYTWSKLT ASERSKALRK WHDLLMSHKE ELALLMTLEQ GKPMKEALGE VNYGASFIEF FAEEAKRVYG DIIPPTLADR RLLVLKQPIG VVGAITPWNF
201: PLAMITRKVG PALACGCTVV VKPSEFTPLT ALAAADLALQ AGIPAGALNV VMGNAPEIGD ELMQSTQVRK ITFTGSTAVG KKLMAGSANT VKKVSLELGG
301: NAPCIVFDDA DIDVAVKGSL AAKFRNSGQT CVCANRILVQ EGIYEKFASA FVKAVQSLQV GNGLEESTSQ GPLINEAAVE KVEKFVGDAT SKGANIMLGG
401: KRHSLGMSFY EPTVVGNVSN DMLLFREEVF GPVAPLIPFK TEEEAIHLAN DTNAGLAAYM FTKSIARSWR VSGALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDDYLEIKYV CMGNLG

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.