Factsheet for VIT_19s0085g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044163	Potato	plastid	78.49	81.09
Solyc09g090700.1.1	Tomato	plastid	78.49	79.69
GSMUA_Achr5P26830_001	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	53.02	78.71
KRH13776	Soybean	mitochondrion	76.04	75.05
KRH43670	Soybean	mitochondrion	75.66	74.67
KXG29578	Sorghum	mitochondrion	72.45	72.87
TraesCS6B01G183600.3	Wheat	mitochondrion	72.08	72.62
Zm00001d053776_P015	Maize	mitochondrion	72.08	72.49
TraesCS6A01G155500.1	Wheat	mitochondrion	71.89	72.43
VIT_19s0085g00870.t01	Wine grape	cytosol	67.17	72.21
TraesCS6D01G145400.4	Wheat	mitochondrion	72.83	71.35
VIT_19s0085g00860.t01	Wine grape	cytosol, mitochondrion, peroxisome	63.4	70.0
Os02t0173900-01	Rice	mitochondrion	39.43	67.42
HORVU6Hr1G031480.15	Barley	mitochondrion	69.06	65.95
VIT_17s0000g07650.t01	Wine grape	peroxisome	36.23	38.17
VIT_14s0066g02410.t01	Wine grape	cytosol, peroxisome, plastid	35.85	38.15
VIT_17s0000g07660.t01	Wine grape	cytosol	17.92	38.15
VIT_17s0000g08070.t01	Wine grape	mitochondrion	36.6	36.06
VIT_01s0137g00080.t01	Wine grape	cytosol	26.6	35.61
VIT_01s0026g00220.t01	Wine grape	mitochondrion	36.23	35.23
VIT_14s0066g01550.t01	Wine grape	mitochondrion	35.28	34.95
VIT_01s0026g00210.t01	Wine grape	cytosol	32.26	29.13
VIT_11s0037g00070.t01	Wine grape	cytosol	26.42	28.23
VIT_04s0008g05810.t01	Wine grape	cytosol	26.04	27.82
VIT_11s0016g00900.t01	Wine grape	cytosol	25.47	26.57
VIT_03s0132g00200.t01	Wine grape	mitochondrion	25.85	25.42
VIT_09s0002g01010.t01	Wine grape	cytosol	20.75	24.34
VIT_05s0077g01060.t01	Wine grape	vacuole	27.17	24.28
VIT_03s0132g00230.t01	Wine grape	cytosol	18.68	17.13
VIT_00s0218g00070.t01	Wine grape	cytosol	26.6	10.22

Protein Annotations

EntrezGene:100262240	wikigene:100262240	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.2.2.1	EMBL:AM466040
InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_CS_GLU	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
ProteinID:CAN79139	ProteinID:CAN79139.1	ProteinID:CCB48979	ProteinID:CCB48979.1	UniProt:F6H9T6	EMBL:FN595503
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004777	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006540	GO:GO:0008150
GO:GO:0008152	GO:GO:0009013	GO:GO:0009056	GO:GO:0009450	GO:GO:0009987	GO:GO:0016491
GO:GO:0016620	GO:GO:0051287	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	EntrezGene:LOC100262240
wikigene:LOC100262240	PFAM:PF00171	ScanProsite:PS00070	ScanProsite:PS00687	PANTHER:PTHR43353	PANTHER:PTHR43353:SF5
SUPFAM:SSF53720	InterPro:Succ_semiAld_DH	TIGR:TC66073	TIGR:TC66898	TIGRFAMs:TIGR01780	UniParc:UPI00019857A1
ArrayExpress:VIT_19s0085g00880	EnsemblPlantsGene:VIT_19s0085g00880	EnsemblPlants:VIT_19s0085g00880.t01	unigene:Vvi.3967	RefSeq:XP_002265514	RefSeq:XP_002265514.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:23353981..23383765

Molecular Weight (calculated)

56594.7 Da

IEP (calculated)

7.591

GRAVY (calculated)

0.101

Length

530 amino acids

Sequence
(BLAST)

001: MGISQMGLLR SSCSALCHGP RTASVLRPSA VLTRQISMDT QNLVARLNSS GLLRSQCLIG GKWTEAYDGK TIPVHNPATG DVLVNVPCMG GQETNDAISV
101: AYEAFLSWSK LTAAERSKRL RKWYDLLIAN KEELGQIITL EQGKPLKEAI GEVNYGAAFI EFSAEEAKRI YGDIIPSPLA DRRLLVLKQP VGVVGAITPW
201: NFPLAMITRK VGPALACGCT VVIKPSELTP LTALAAAELA LQAGIPPGAV NVVFGNAPEI GDALLASRQV RKITFTGSTA VGKKLMAGAA QTVKKVSLEL
301: GGNAPCIIFD DADLEVAVKG ALGTKFRNSG QTCVCANRIL VQEGIYEKFA IAFSQAVQSM QVGEGFTEGV VQGPLINEAA VQKVESFVKD AVSKGAKVLL
401: GGKRHSLGMT FYEPTVIGDI KNDMLIARNE VFGPVAPLLR FKTEEEAIRI ANDTNAGLAA YVFTENVQRM WRVTEALEYG LVGVNEGLVS TEVAPFGGVK
501: ESGLGREGSK YGMDEFLEMK YVCFGNISSN

Best Arabidopsis Sequence Match ( AT1G79440.1 )
(BLAST)

001: MVIGAAARVA IGGCRKLISS HTSLLLVSSQ CRQMSMDAQS VSEKLRSSGL LRTQGLIGGK WLDSYDNKTI KVNNPATGEI IADVACMGTK ETNDAIASSY
101: EAFTSWSRLT AGERSKVLRR WYDLLIAHKE ELGQLITLEQ GKPLKEAIGE VAYGASFIEY YAEEAKRVYG DIIPPNLSDR RLLVLKQPVG VVGAITPWNF
201: PLAMITRKVG PALASGCTVV VKPSELTPLT ALAAAELALQ AGVPPGALNV VMGNAPEIGD ALLTSPQVRK ITFTGSTAVG KKLMAAAAPT VKKVSLELGG
301: NAPSIVFDDA DLDVAVKGTL AAKFRNSGQT CVCANRVLVQ DGIYDKFAEA FSEAVQKLEV GDGFRDGTTQ GPLINDAAVQ KVETFVQDAV SKGAKIIIGG
401: KRHSLGMTFY EPTVIRDVSD NMIMSKEEIF GPVAPLIRFK TEEDAIRIAN DTIAGLAAYI FTNSVQRSWR VFEALEYGLV GVNEGLISTE VAPFGGVKQS
501: GLGREGSKYG MDEYLEIKYV CLGDMNRH

Arabidopsis Description

ALDH5F1Succinate-semialdehyde dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.